Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes
Combining multiple repeat detection methods enables the comprehensive annotation of all repeated sequences in Citrus genomes. Using the final reference library reported in this work will improve our understanding of the dynamics of repeated sequences during Citrus speciation, particularly following the genome duplication and hybridization events that led to modern cultivars. The exploration of repeat position insertions along chromosomes using the developed web interface, RepeatLoc Citrus, will also make it possible to further investigate the role of transposable elements and endogenous caulimovirids in genome structure and gene regulation in Citrus species.
Authors
- Marilyne Summo (ORCID: https://orcid.org/0000-0002-9308-974X)
- Gaëtan Droc (ORCID: https://orcid.org/0000-0003-1849-1269)
- Pierre‐Yves Teycheney (ORCID: https://orcid.org/0000-0002-9754-0745)
- Stéphanie Bocs (ORCID: https://orcid.org/0000-0001-7850-4426)
- Héléna Vassilieff (ORCID: https://orcid.org/0000-0002-8578-8153)
- Patrick Ollitrault (ORCID: https://orcid.org/0000-0002-9456-5517)
- Nathalie Choisne (ORCID: https://orcid.org/0000-0001-6024-1664)
- François Luro (ORCID: https://orcid.org/0000-0002-5189-5735)
- Delphine Giraud (ORCID: https://orcid.org/0000-0002-1563-0123)
- Florian Maumus (ORCID: https://orcid.org/0000-0001-7325-0527)
- Gilles Costantino
Institutions
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement (FR)
- University of Reunion Island (RE)
- Université Paris-Saclay (FR)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales (FR)
- Peuplements végétaux et bioagresseurs en milieu tropical (RE)
- Institut Agro Montpelier (FR)
Publication Details
- Journal
- BMC Genomic Data
- Published
- 2025-04-18
- DOI
- https://doi.org/10.1186/s12863-025-01321-6
- Citations
- 4
- Primary Topic
- Phytoplasmas and Hemiptera pathogens
- Type
- article
- Field-Weighted Citation Impact
- 5.25
Funders
- European Regional Development Fund