Convolutional Neural Network approach to classify mitochondrial morphologies

The morphology of the mitochondrial network is a major indicator of cellular health and function, with changes often linked to various physiological and pathological conditions. As a result, efficient methods to quickly assess mitochondrial shape in cellular populations from microscopy images in a quantitative manner are of high interest for the health and life sciences. Here, we present MitoClass, a deep learning-based software designed for automated mitochondrial classification. MitoClass employs a classification algorithm that categorizes mitochondrial network shapes into three classes: fragmented, intermediate, and elongated. By leveraging super-resolution images, we curated a comprehensive dataset for training, including both high- and low-resolution representations of mitochondrial networks. Using a Convolutional Neural Network (CNN) architecture, our model effectively distinguishes between different mitochondrial morphologies. Through rigorous training and validation, MitoClass provides a fast, accurate, and user-friendly solution for researchers and clinicians to assess the organization of the mitochondrial network as a proxy for studying organelle health and dynamics.

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Publication Details

Journal
Computational Biology and Chemistry
Published
2025-04-17
DOI
https://doi.org/10.1016/j.compbiolchem.2025.108477
Citations
1
Primary Topic
Machine Learning in Bioinformatics
Type
article
Field-Weighted Citation Impact
0.81

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article

Convolutional Neural Network approach to classify mitochondrial morphologies

Ana J. García‐Sáez, Soumaya Zaghbani, Lukas Faber
1 citations
Computational Biology and Chemistry
Machine Learning in Bioinformatics
0.81
article

Convolutional Neural Network approach to classify mitochondrial morphologies

Ana J. García‐Sáez, Soumaya Zaghbani, Lukas Faber
article en
1 citations

Abstract

The morphology of the mitochondrial network is a major indicator of cellular health and function, with changes often linked to various physiological and pathological conditions. As a result, efficient methods to quickly assess mitochondrial shape in cellular populations from microscopy images in a quantitative manner are of high interest for the health and life sciences. Here, we present MitoClass, a deep learning-based software designed for automated mitochondrial classification. MitoClass employs a classification algorithm that categorizes mitochondrial network shapes into three classes: fragmented, intermediate, and elongated. By leveraging super-resolution images, we curated a comprehensive dataset for training, including both high- and low-resolution representations of mitochondrial networks. Using a Convolutional Neural Network (CNN) architecture, our model effectively distinguishes between different mitochondrial morphologies. Through rigorous training and validation, MitoClass provides a fast, accurate, and user-friendly solution for researchers and clinicians to assess the organization of the mitochondrial network as a proxy for studying organelle health and dynamics.

Computational Biology and ChemistryVol. 118
University of Cologne (DE), Max Planck Institute of Biophysics (DE), Cologne Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases (DE)
Alexander von Humboldt-Stiftung, Deutsche Forschungsgemeinschaft
Openalex Percentile: Top 29%
Machine Learning in Bioinformatics
0.81
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