Deep recurrent neural network with fractional addax optimization algorithm for influenza virus host prediction

The accurate prediction of the host of influenza viruses is a significant challenge in bioinformatics, as it is crucial for understanding viral transmission dynamics and host-virus interactions. This research•Introduces a novel approach for predicting the host of influenza viruses by leveraging protein sequences.•Extraction of features, including sequence length, Amino Acid Composition (AAC), Dipeptide Composition (DPC), Tripeptide Composition (TPC), aromaticity, secondary structure fraction, and entropy from protein sequence.•Addresses the data imbalance and improves model generalization, the oversampling technique is applied for data augmentation. The prediction model employs a Deep Recurrent Neural Network (DRNN) optimized by Fractional Addax Optimization 34 Algorithm (FAOA), a hybrid of Addax Optimization Algorithm (AOA) and Fractional Concept (FC), designed to perform 35 influenza virus host prediction. The model's performance is evaluated using metrics, such as Matthews's Correlation 36 Coefficient (MCC), F1-Score, and Mean Squared Error (MSE). Experimental results demonstrate that the DRNN_FAOA 37 model significantly outperforms existing methods, achieving the highest MCC of 0.937, F1-Score of 0.917, and the 38 lowest MSE of 0.038. The proposed DRNN_FAOA model's ability to accurately predict influenza virus hosts suggests its 39 potential as a robust model in virus-host prediction.

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Publication Details

Journal
MethodsX
Published
2025-04-17
DOI
https://doi.org/10.1016/j.mex.2025.103319
Citations
1
Primary Topic
Image Processing Techniques and Applications
Type
article
Field-Weighted Citation Impact
1.14
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article

Deep recurrent neural network with fractional addax optimization algorithm for influenza virus host prediction

Vinod Kimbahune, Kapil Vhatkar, Sonali Kothari, Sharad Adsure et al.
1 citations
MethodsX
Image Processing Techniques and Applications
1.14
article

Deep recurrent neural network with fractional addax optimization algorithm for influenza virus host prediction

Vinod Kimbahune, Kapil Vhatkar, Sonali Kothari, Sharad Adsure, Shweta Ashish Koparde
article en
1 citations

Abstract

The accurate prediction of the host of influenza viruses is a significant challenge in bioinformatics, as it is crucial for understanding viral transmission dynamics and host-virus interactions. This research•Introduces a novel approach for predicting the host of influenza viruses by leveraging protein sequences.•Extraction of features, including sequence length, Amino Acid Composition (AAC), Dipeptide Composition (DPC), Tripeptide Composition (TPC), aromaticity, secondary structure fraction, and entropy from protein sequence.•Addresses the data imbalance and improves model generalization, the oversampling technique is applied for data augmentation. The prediction model employs a Deep Recurrent Neural Network (DRNN) optimized by Fractional Addax Optimization 34 Algorithm (FAOA), a hybrid of Addax Optimization Algorithm (AOA) and Fractional Concept (FC), designed to perform 35 influenza virus host prediction. The model's performance is evaluated using metrics, such as Matthews's Correlation 36 Coefficient (MCC), F1-Score, and Mean Squared Error (MSE). Experimental results demonstrate that the DRNN_FAOA 37 model significantly outperforms existing methods, achieving the highest MCC of 0.937, F1-Score of 0.917, and the 38 lowest MSE of 0.038. The proposed DRNN_FAOA model's ability to accurately predict influenza virus hosts suggests its 39 potential as a robust model in virus-host prediction.

MethodsXVol. 14
Symbiosis International University (IN), Dr. D. Y. Patil Medical College, Hospital and Research Centre (IN)
Openalex Percentile: Top 21%
Image Processing Techniques and Applications
1.14
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Deep recurrent neural network with fractional addax optimization algorithm for influenza virus host prediction — Vinod Kimbahune, Kapil Vhatkar, et al. · MethodsX (2025) | TGRS Research Map | TGRS