Aqueous lead speciation determined using DNAzyme GR5

Environmental context The on-site and real-time detection of metal ions is important for environmental monitoring and risk assessment. For appropriate management decisions, it is necessary to specifically sense the labile fraction of metal rather than total metal. This study provides a proof-of-principle that the DNAzyme GR5 can be used to sense labile lead in natural waters containing dissolved organic matter. Rationale DNAzyme-based sensors are a promising technology for possible labile metal monitoring that have not yet been fully tested in real waters. In clean, buffered, laboratory waters specific DNAzymes interact with specific metal ions and produce a signal (e.g. fluorescence). In more complex natural solutions the free ion concentration is reduced by complexation (e.g. to dissolved organic matter, DOM) and the signal would not be proportional to total metal, but hypothetically proportional to the labile fraction of total metal; i.e. the fraction of metal available to interact with the DNA. Methodology Here, an existing metal specific RNA-cleaving DNAzyme for Pb2+ (GR5) is used to test waters representative of natural solutions. Samples were prepared with ionic strengths from 25 to 100 mM using sodium acetate, sodium chloride and sodium bicarbonate. In addition, pH values of 6.5, 7.5 and 8.5 were tested for the different electrolytes, with and without added dissolved organic carbon, at 2, 5 and 8 mg C L–1. Lead additions were performed at toxicologically relevant levels (less than or equal to 1 µM of added lead). Results and discussion The GR5 response was found to be dependent on ionic strength, including identity of the background electrolyte, where high ionic strength slowed the reaction and chloride media increased reaction speed. Reproducible responses of GR5 are possible at conditions similar to natural waters, except responses were too fast for high pH (8.5 or higher), low DOC (less than 2 mg C L–1) and low ionic strength (25 mM). It is found that GR5 responds to three lead species, PbOH+, PbCl+ and Pb2+, with relative sensitivities in the same order. GR5 does not respond to lead complexed with acetate, carbonate or DOM. It is possible to use the measured first-order rate constant for lead induced fluorescence of GR5 to calculate ionic lead that agrees within a factor of two with respect to Windermere Humic Aqueous Model predictions. Thus, GR5 may represent a labile lead probe, although further work is necessary to test this.

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Publication Details

Journal
Environmental Chemistry
Published
2025-04-17
DOI
https://doi.org/10.1071/en24054
Primary Topic
Advanced biosensing and bioanalysis techniques
Type
article
Field-Weighted Citation Impact
0.00

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article

Aqueous lead speciation determined using DNAzyme GR5

Gaganprit Gill, Heather M. Gaebler, Juewen Liu, Ian Hamilton et al.
Environmental Chemistry
Advanced biosensing and bioanalysis techniques
article

Aqueous lead speciation determined using DNAzyme GR5

Gaganprit Gill, Heather M. Gaebler, Juewen Liu, Ian Hamilton, D. Scott Smith
article en

Abstract

Environmental context The on-site and real-time detection of metal ions is important for environmental monitoring and risk assessment. For appropriate management decisions, it is necessary to specifically sense the labile fraction of metal rather than total metal. This study provides a proof-of-principle that the DNAzyme GR5 can be used to sense labile lead in natural waters containing dissolved organic matter. Rationale DNAzyme-based sensors are a promising technology for possible labile metal monitoring that have not yet been fully tested in real waters. In clean, buffered, laboratory waters specific DNAzymes interact with specific metal ions and produce a signal (e.g. fluorescence). In more complex natural solutions the free ion concentration is reduced by complexation (e.g. to dissolved organic matter, DOM) and the signal would not be proportional to total metal, but hypothetically proportional to the labile fraction of total metal; i.e. the fraction of metal available to interact with the DNA. Methodology Here, an existing metal specific RNA-cleaving DNAzyme for Pb2+ (GR5) is used to test waters representative of natural solutions. Samples were prepared with ionic strengths from 25 to 100 mM using sodium acetate, sodium chloride and sodium bicarbonate. In addition, pH values of 6.5, 7.5 and 8.5 were tested for the different electrolytes, with and without added dissolved organic carbon, at 2, 5 and 8 mg C L–1. Lead additions were performed at toxicologically relevant levels (less than or equal to 1 µM of added lead). Results and discussion The GR5 response was found to be dependent on ionic strength, including identity of the background electrolyte, where high ionic strength slowed the reaction and chloride media increased reaction speed. Reproducible responses of GR5 are possible at conditions similar to natural waters, except responses were too fast for high pH (8.5 or higher), low DOC (less than 2 mg C L–1) and low ionic strength (25 mM). It is found that GR5 responds to three lead species, PbOH+, PbCl+ and Pb2+, with relative sensitivities in the same order. GR5 does not respond to lead complexed with acetate, carbonate or DOM. It is possible to use the measured first-order rate constant for lead induced fluorescence of GR5 to calculate ionic lead that agrees within a factor of two with respect to Windermere Humic Aqueous Model predictions. Thus, GR5 may represent a labile lead probe, although further work is necessary to test this.

Environmental ChemistryVol. 22(3)
Human Growth Foundation (US)
Natural Sciences and Engineering Research Council of Canada, Global Water Futures
Openalex Percentile: Top 93%
Advanced biosensing and bioanalysis techniques
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