Using the Coefficient of Conformism of a Correlative Prediction in Simulation of Cardiotoxicity

The optimal descriptors generated by the CORAL software are studied as potential models of cardiotoxicity. Two significantly different cardiotoxicity databases are studied here. Database 1 contains 394 hERG inhibitors (pIC50) and external 200 substances that are potential drugs, which were used to confirm the predictive potential of the approach for Database 1. Database 2 contains cardiotoxicity data for 13864 different compounds in a format where active is denoted as 1 and inactive is denoted as 0. The same model-building algorithms were applied to all three databases using the Monte Carlo method and Las Vegas algorithm. The latter was used to rationally distribute the available data into training and validation sets. The Monte Carlo optimization for the correlation weights of different molecular features extracted from SMILES was improved by including the conformity coefficient of the correlation prediction (CCCP). This improvement provided greater predictive potential in the considered models.

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Publication Details

Journal
Toxics
Published
2025-04-16
DOI
https://doi.org/10.3390/toxics13040309
Citations
1
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
1.50

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article

Using the Coefficient of Conformism of a Correlative Prediction in Simulation of Cardiotoxicity

Andrey Andreevich Toropov, Emilio Benfenati, Alessandra Roncaglioni, Alla P. Toropova
1 citations
Toxics
Computational Drug Discovery Methods
1.50
article

Using the Coefficient of Conformism of a Correlative Prediction in Simulation of Cardiotoxicity

Andrey Andreevich Toropov, Emilio Benfenati, Alessandra Roncaglioni, Alla P. Toropova
article en
1 citations

Abstract

The optimal descriptors generated by the CORAL software are studied as potential models of cardiotoxicity. Two significantly different cardiotoxicity databases are studied here. Database 1 contains 394 hERG inhibitors (pIC50) and external 200 substances that are potential drugs, which were used to confirm the predictive potential of the approach for Database 1. Database 2 contains cardiotoxicity data for 13864 different compounds in a format where active is denoted as 1 and inactive is denoted as 0. The same model-building algorithms were applied to all three databases using the Monte Carlo method and Las Vegas algorithm. The latter was used to rationally distribute the available data into training and validation sets. The Monte Carlo optimization for the correlation weights of different molecular features extracted from SMILES was improved by including the conformity coefficient of the correlation prediction (CCCP). This improvement provided greater predictive potential in the considered models.

ToxicsVol. 13(4)
Mario Negri Institute for Pharmacological Research (IT)
European Commission
Life below water
Openalex Percentile: Top 18%
Computational Drug Discovery Methods
1.50
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