Extreme events in gene regulatory networks with time-delays

This work explores distinct complex dynamics of simplified two nodes of coupled gene regulatory networks with multiple delays in two self-inhibitory and mutually activated genes. We have identified the emergence of extreme events within a specific range of system parameter values. A detailed analysis of the time delay-induced emergence of extreme events is illustrated using bifurcation analysis, two-parameter phase diagrams, return maps, temporal plots, and probability density functions. The reasons behind the advent of extreme events are discussed in detail, with possible analogies to simplified two nodes of gene regulatory networks. The occasional large-amplitude bursting originated in the system via interior crisis-induced intermittency, Pomeau-Manneville intermittency, and the breakdown of quasiperiodic intermittency routes. Additionally, we have used various recurrence quantification statistical measures, such as mean recurrence time, determinism, and recurrence time entropy, to describe the transition from periodic or chaotic to unforeseen large deviations. Our approach shows that the sudden surge of variance and mean recurrence time at the transition points can be used as a new metric to detect the critical transitions of distinct extreme bursting events. The comprehensive overview of the interaction between gene regulatory networks, with insights into the formation of unusual dynamics, is beneficial to grasping different neuronal diseases.

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Publication Details

Journal
Scientific Reports
Published
2025-04-16
DOI
https://doi.org/10.1038/s41598-025-97268-w
Citations
3
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
2.42

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article

Extreme events in gene regulatory networks with time-delays

Tomasz Kapitaniak, S. Vinoth, S. Leo Kingston, Sabarathinam Srinivasan et al.
3 citations
Scientific Reports
Gene Regulatory Network Analysis
2.42
article

Extreme events in gene regulatory networks with time-delays

Tomasz Kapitaniak, S. Vinoth, S. Leo Kingston, Sabarathinam Srinivasan, Suresh Kumarasamy
article en
3 citations

Abstract

This work explores distinct complex dynamics of simplified two nodes of coupled gene regulatory networks with multiple delays in two self-inhibitory and mutually activated genes. We have identified the emergence of extreme events within a specific range of system parameter values. A detailed analysis of the time delay-induced emergence of extreme events is illustrated using bifurcation analysis, two-parameter phase diagrams, return maps, temporal plots, and probability density functions. The reasons behind the advent of extreme events are discussed in detail, with possible analogies to simplified two nodes of gene regulatory networks. The occasional large-amplitude bursting originated in the system via interior crisis-induced intermittency, Pomeau-Manneville intermittency, and the breakdown of quasiperiodic intermittency routes. Additionally, we have used various recurrence quantification statistical measures, such as mean recurrence time, determinism, and recurrence time entropy, to describe the transition from periodic or chaotic to unforeseen large deviations. Our approach shows that the sudden surge of variance and mean recurrence time at the transition points can be used as a new metric to detect the critical transitions of distinct extreme bursting events. The comprehensive overview of the interaction between gene regulatory networks, with insights into the formation of unusual dynamics, is beneficial to grasping different neuronal diseases.

Scientific ReportsVol. 15(1)
National Institute of Technology Tiruchirappalli (IN), SRM Institute of Science and Technology (IN), Lodz University of Technology (PL), Indian Institute of Management Tiruchirappalli (IN), SRM Dental College (IN), Saveetha University (IN)
SRM Institute of Science and Technology, Narodowym Centrum Nauki
Openalex Percentile: Top 12%
Gene Regulatory Network Analysis
2.42
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