Can MDS rival with t-SNE by using the symmetric Kullback-Leibler divergence\\ across neighborhoods as a pseudo-distance?
Local methods of dimensionality reduction like neighborhood embedding (NE) and t-SNE in particular outperform older global approaches such as stress-based multi-dimensional scaling (MDS).Stochastic neighborhoods are less sensitive than distances to statistical variations between spaces with strongly different dimensionalities, making a match across them very difficult.Here, we take inspiration from those stochastic neighborhoods in order to devise a pseudo-distance that is less prone to concentration than the Euclidean distance.For two points in the high-dimensional data space, it is defined as the symmetrized Kullback-Leibler divergence across the (stochastic) neighborhoods of the two points (SKLAN).Plugging the SKLAN in a method of stress-based MDS, we compare quantitatively t-SNE, MDS with all Euclidean distances, and MDS with SKLAN & Euclidean distances on several data sets.The results show that SKLAN allows MDS to perform competitively with t-SNE.
Authors
- Michel Verleysen (ORCID: https://orcid.org/0000-0003-4366-6155)
- P Merveille
- Pierre Lambert (ORCID: https://orcid.org/0000-0001-7604-0584)
- John Chi‐Kin Lee (ORCID: https://orcid.org/0000-0002-3235-0967)
- Dounia Mulders (ORCID: https://orcid.org/0000-0003-4855-5331)
- Cyril de Bodt (ORCID: https://orcid.org/0000-0003-2347-1756)
- Edouard Couplet
- Ludovic Journaux
Institutions
- Institut Agro Dijon (FR)
- Laboratoire d'Informatique de Bourgogne (FR)
Publication Details
- Published
- 2025-01-01
- DOI
- https://doi.org/10.14428/esann/2025.es2025-174
- Primary Topic
- Complex Systems and Time Series Analysis
- Type
- article
- Field-Weighted Citation Impact
- 0.00