Morphological, Molecular, and Morphometric Analysis of Aphelenchoides besseyi on Organic Rice (Oryza sativa) Seeds in the Beringin District, Deli Serdang Regency, Indonesia

Aphelenchoides besseyi, a nematode, can infect rice resulting in the white shoot disease, which decreases the germina-tion rate and even causes seedling death. A. besseyi has recently been reported to mainly attack the organic rice varie-ties especially Pandanwangi and Ciherang in the Pasar Kawat, Beringin District, Deli Serdang, Indonesia. This research investigated A. besseyi via morphological, molecular, and morphometric approaches. The nematodes were observed in an area of 2000 m2, divided into five sample plots each with an area of 400 m2 on which Pandan Wangi and Ciherang rice were cultivated. Nematode morphology was observed using a stereo microscope at a 10–100x magnification. Mo-lecular identification employed PCR, followed by sequencing and phylogenetic analysis. This nematode possessed typ-ical morphological characteristics namely a longer female body (457.07–738.86 µm) than males (385.23–505.29 µm), and cured spicules, 17 to 21 µm long. The tail was ribbon-shaped with a tapered tip that had a mucrone with 2–4 points. Sequencing and phylogenetic analysis revealed that A. besseyi isolated from Indonesia (Deli Serdang/North Sumatra) was closely related to those from China, India, Russia, Taiwan, and Portugal with a 98% homology level.

Publication Details

Journal
Makara Journal of Science
Published
2025-03-20
DOI
https://doi.org/10.7454/mss.v29i1.2335
Primary Topic
GABA and Rice Research
Type
article
Field-Weighted Citation Impact
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article

Morphological, Molecular, and Morphometric Analysis of Aphelenchoides besseyi on Organic Rice (Oryza sativa) Seeds in the Beringin District, Deli Serdang Regency, Indonesia

Makara Journal of Science
GABA and Rice Research
article

Morphological, Molecular, and Morphometric Analysis of Aphelenchoides besseyi on Organic Rice (Oryza sativa) Seeds in the Beringin District, Deli Serdang Regency, Indonesia

article en

Abstract

Aphelenchoides besseyi, a nematode, can infect rice resulting in the white shoot disease, which decreases the germina-tion rate and even causes seedling death. A. besseyi has recently been reported to mainly attack the organic rice varie-ties especially Pandanwangi and Ciherang in the Pasar Kawat, Beringin District, Deli Serdang, Indonesia. This research investigated A. besseyi via morphological, molecular, and morphometric approaches. The nematodes were observed in an area of 2000 m2, divided into five sample plots each with an area of 400 m2 on which Pandan Wangi and Ciherang rice were cultivated. Nematode morphology was observed using a stereo microscope at a 10–100x magnification. Mo-lecular identification employed PCR, followed by sequencing and phylogenetic analysis. This nematode possessed typ-ical morphological characteristics namely a longer female body (457.07–738.86 µm) than males (385.23–505.29 µm), and cured spicules, 17 to 21 µm long. The tail was ribbon-shaped with a tapered tip that had a mucrone with 2–4 points. Sequencing and phylogenetic analysis revealed that A. besseyi isolated from Indonesia (Deli Serdang/North Sumatra) was closely related to those from China, India, Russia, Taiwan, and Portugal with a 98% homology level.

Makara Journal of ScienceVol. 29(1)
Zero hunger
Openalex Percentile: Top 95%
GABA and Rice Research
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