Machine learning workflows beyond linear models in low-data regimes

Data-driven methodologies are transforming chemical research by providing chemists with digital tools that accelerate discovery and promote sustainability. In this context, non-linear machine learning algorithms are among the most disruptive technologies in the field and have proven effective for handling large datasets. However, in data-limited scenarios, linear regression has traditionally prevailed due to its simplicity and robustness, while non-linear models have been met with skepticism over concerns related to interpretability and overfitting. In this study, we introduce ready-to-use, automated workflows designed to overcome these challenges. These frameworks mitigate overfitting through Bayesian hyperparameter optimization by incorporating an objective function that accounts for overfitting in both interpolation and extrapolation. Benchmarking on eight diverse chemical datasets, ranging from 18 to 44 data points, demonstrates that when properly tuned and regularized, non-linear models can perform on par with or outperform linear regression. Furthermore, interpretability assessments and <i>de novo</i> predictions reveal that non-linear models capture underlying chemical relationships similarly to their linear counterparts. Ultimately, the automated non-linear workflows presented have the potential to become valuable tools in a chemist's toolbox for studying problems in low-data regimes alongside traditional linear models.

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Institutions

Publication Details

Journal
Chemical Science
Published
2025-01-01
DOI
https://doi.org/10.1039/d5sc00996k
Citations
9
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
37.52

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article

Machine learning workflows beyond linear models in low-data regimes

Matthew S. Sigman, David Dalmau, Juan V. Alegre‐Requena
9 citations
Chemical Science
Scientific Computing and Data Management
37.52
article

Machine learning workflows beyond linear models in low-data regimes

Matthew S. Sigman, David Dalmau, Juan V. Alegre‐Requena
article en
9 citations

Abstract

Data-driven methodologies are transforming chemical research by providing chemists with digital tools that accelerate discovery and promote sustainability. In this context, non-linear machine learning algorithms are among the most disruptive technologies in the field and have proven effective for handling large datasets. However, in data-limited scenarios, linear regression has traditionally prevailed due to its simplicity and robustness, while non-linear models have been met with skepticism over concerns related to interpretability and overfitting. In this study, we introduce ready-to-use, automated workflows designed to overcome these challenges. These frameworks mitigate overfitting through Bayesian hyperparameter optimization by incorporating an objective function that accounts for overfitting in both interpolation and extrapolation. Benchmarking on eight diverse chemical datasets, ranging from 18 to 44 data points, demonstrates that when properly tuned and regularized, non-linear models can perform on par with or outperform linear regression. Furthermore, interpretability assessments and <i>de novo</i> predictions reveal that non-linear models capture underlying chemical relationships similarly to their linear counterparts. Ultimately, the automated non-linear workflows presented have the potential to become valuable tools in a chemist's toolbox for studying problems in low-data regimes alongside traditional linear models.

Chemical ScienceVol. 16(19)
University of Utah (US), Universidad de Zaragoza (ES), Instituto de Síntesis Química y Catálisis Homogénea (ES)
European Commission, Gobierno de Aragón, Agencia Estatal de Investigación, Departamento de Educación, Cultura y Deporte, Gobierno de Aragón, European Social Fund
Openalex Percentile: Top 0%
Scientific Computing and Data Management
37.52
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Machine learning workflows beyond linear models in low-data regimes — Matthew S. Sigman, David Dalmau, et al. · Chemical Science (2025) | TGRS Research Map | TGRS