Genome-Wide Profiling of the Genes Resistant to Bursaphelenchus xylophilus in Pinus tabuliformis Carriere

Bursaphelenchus xylophilus is a pine wood nematode capable of destroying pine forests. Exploring the genes providing resistance to this pathogen and understanding their resistance mechanisms is thus necessary and constitutes an effective way to tackle this problem. We used Pinus tabuliformis Carriere to dissect its response to B. xylophilus strain BxFC. The 30 d inoculation results showed that the P. tabuliformis germplasms exhibited a wide resistance spectrum. Some lines were sensitive with the needles fully wilted and the MDA content and the relative conductivity of needles greatly increased, while some lines demonstrated strong resistance with good needle vigor and better physiological conditions. Moreover, the transcriptome analysis revealed 7928 differentially expressed genes (DEGs) between the resistant and sensitive germplasm pools, including 3754 upregulated and 4174 downregulated genes in the resistant lines. These DEGs were specially enriched in the pathways of plant–pathogen interaction (318 genes), phenylpropanoid biosynthesis (108 genes), ubiquitin-mediated proteolysis (47 genes), carotenoid biosynthesis (18 genes), and monoterpenoid biosynthesis (9 genes). Accordingly, P. tabuliformis utilized multiple ways to control the proliferation and activity of B. xylophilus, such as immune response, ubiquitination, thickening plant cell walls, and increasing its terpenoid and antioxidant contents. Our results could thus help in better understanding the resistance process of P. tabuliformis against B. xylophilus and offer some new strategies and gene resources for a molecular breeding program of resistant P. tabuliformis.