Using machine learning methods to predict the diabatic bond dissociation energy of non-heme iron complexes

Bond dissociation energy (BDE) is an important property in chemical research. In the process of non-heme iron complex catalytic reactions, diabatic BDE has a significant impact on the selectivity of halogenation and hydroxylation reactions. Measuring or calculating BDE by using traditional experimental or theoretical methods is often expensive and complex, so we propose the first application of machine learning on non-heme iron complexes to predict and rationalize the diabatic BDEs of Fe-X and Fe-OH bonds in order to assist in the study of selectivity in non-heme iron complex catalytic reactions. We built a reliable and representative dataset containing over 600 types of non-heme iron complexes and used density functional theory (DFT) to calculate nearly 900 diabatic BDE for machine learning. In terms of model training, we used 2D molecular fingerprints and 3D descriptors as inputs to train the regression model. The results indicate that the ensemble algorithm combined with Morgan fingerprints can effectively predict the diabatic BDEs of non-heme iron complexes. Using the Gradient Boosting Regressor (GBR) model and Morgan fingerprints can achieve an accurate prediction of <i>R</i><sup>2</sup> = 0.791 and the mean absolute error (MAE) = 10.23 kcal mol<sup>-1</sup>. The incorporation of 3D descriptors significantly improves the predictive performance of molecular fingerprints other than Morgan fingerprints. Notably, the SOAP descriptor effectively captures key 3D molecular information, making it particularly advantageous for predicting isomers with large ΔBDE. However, when the ΔBDE of isomers in the dataset is small, Morgan fingerprints remain the more efficient choice.

Authors

Institutions

Publication Details

Journal
Organic & Biomolecular Chemistry
Published
2025-01-01
DOI
https://doi.org/10.1039/d5ob00007f
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Using machine learning methods to predict the diabatic bond dissociation energy of non-heme iron complexes

Xiahe Chen, Yun‐Fang Yang, Debo Ding, Juehan Gao et al.
Organic & Biomolecular Chemistry
Machine Learning in Materials Science
article

Using machine learning methods to predict the diabatic bond dissociation energy of non-heme iron complexes

Xiahe Chen, Yun‐Fang Yang, Debo Ding, Juehan Gao, Yuanbin She, Mingjin Tang, Zhengwei Chen
article en

Abstract

Bond dissociation energy (BDE) is an important property in chemical research. In the process of non-heme iron complex catalytic reactions, diabatic BDE has a significant impact on the selectivity of halogenation and hydroxylation reactions. Measuring or calculating BDE by using traditional experimental or theoretical methods is often expensive and complex, so we propose the first application of machine learning on non-heme iron complexes to predict and rationalize the diabatic BDEs of Fe-X and Fe-OH bonds in order to assist in the study of selectivity in non-heme iron complex catalytic reactions. We built a reliable and representative dataset containing over 600 types of non-heme iron complexes and used density functional theory (DFT) to calculate nearly 900 diabatic BDE for machine learning. In terms of model training, we used 2D molecular fingerprints and 3D descriptors as inputs to train the regression model. The results indicate that the ensemble algorithm combined with Morgan fingerprints can effectively predict the diabatic BDEs of non-heme iron complexes. Using the Gradient Boosting Regressor (GBR) model and Morgan fingerprints can achieve an accurate prediction of <i>R</i><sup>2</sup> = 0.791 and the mean absolute error (MAE) = 10.23 kcal mol<sup>-1</sup>. The incorporation of 3D descriptors significantly improves the predictive performance of molecular fingerprints other than Morgan fingerprints. Notably, the SOAP descriptor effectively captures key 3D molecular information, making it particularly advantageous for predicting isomers with large ΔBDE. However, when the ΔBDE of isomers in the dataset is small, Morgan fingerprints remain the more efficient choice.

Organic & Biomolecular ChemistryVol. 23(19)
Zhejiang University of Technology (CN), Zhejiang University (CN)
Affordable and clean energy
Openalex Percentile: Top 95%
Machine Learning in Materials Science
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.