Assessing Nonbonded Aggregates Populations: Application to the Concentration-Dependent IR O–H Band of Phenol

In this work, we present two alternative computational strategies to determine the populations of nonbonded aggregates. One approach extracts these populations from molecular dynamics (MD) simulations, while the other employs quantum mechanical partition functions for the most relevant minima of the multimolecular potential energy surfaces (PESs), identified by automated conformational sampling. In both cases, we adopt a common graph-theory-based framework, introduced in this work, for identifying aggregate conformations, which enables a consistent comparative assessment of both methodologies and provides insight into the underlying approximations. We apply both strategies to investigate phenol aggregates, up to the tetramer, at different concentrations in phenol/carbon tetrachloride mixtures. Subsequently, we simulate the concentration-dependent OH stretching IR region by averaging the harmonic Infrared (IR) spectra of aggregates using the populations predicted by each strategy. Our results indicate that the populations extracted from MD trajectories yield OH stretching signals that closely follow the experimental trends, outperforming the spectra from populations obtained by systematic conformational searches. Such a better performance of MD is attributed to a better description of the entropic contributions. Moreover, the proposed protocol not only successfully addresses a very challenging problem but also offers a benchmark to assess the accuracy of the intermolecular force fields.

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Journal
Journal of Chemical Theory and Computation
Published
2025-04-14
DOI
https://doi.org/10.1021/acs.jctc.5c00281
Primary Topic
Spectroscopy and Chemometric Analyses
Type
article
Field-Weighted Citation Impact
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article

Assessing Nonbonded Aggregates Populations: Application to the Concentration-Dependent IR O–H Band of Phenol

José Zúñiga, Javier Cerezo, Josefa Gálvez
Journal of Chemical Theory and Computation
Spectroscopy and Chemometric Analyses
article

Assessing Nonbonded Aggregates Populations: Application to the Concentration-Dependent IR O–H Band of Phenol

José Zúñiga, Javier Cerezo, Josefa Gálvez
article en

Abstract

In this work, we present two alternative computational strategies to determine the populations of nonbonded aggregates. One approach extracts these populations from molecular dynamics (MD) simulations, while the other employs quantum mechanical partition functions for the most relevant minima of the multimolecular potential energy surfaces (PESs), identified by automated conformational sampling. In both cases, we adopt a common graph-theory-based framework, introduced in this work, for identifying aggregate conformations, which enables a consistent comparative assessment of both methodologies and provides insight into the underlying approximations. We apply both strategies to investigate phenol aggregates, up to the tetramer, at different concentrations in phenol/carbon tetrachloride mixtures. Subsequently, we simulate the concentration-dependent OH stretching IR region by averaging the harmonic Infrared (IR) spectra of aggregates using the populations predicted by each strategy. Our results indicate that the populations extracted from MD trajectories yield OH stretching signals that closely follow the experimental trends, outperforming the spectra from populations obtained by systematic conformational searches. Such a better performance of MD is attributed to a better description of the entropic contributions. Moreover, the proposed protocol not only successfully addresses a very challenging problem but also offers a benchmark to assess the accuracy of the intermolecular force fields.

Journal of Chemical Theory and ComputationVol. 21(8)
Universidad Autónoma de Madrid (ES), Universidad de Murcia (ES)
Ministerio de Ciencia, Innovación y Universidades, Universidad de Murcia
Zero hunger
Openalex Percentile: Top 92%
Spectroscopy and Chemometric Analyses
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