Fine-grained forecasting of COVID-19 trends at the county level in the United States

The novel coronavirus (COVID-19) pandemic has had a devastating global impact, profoundly affecting daily life, healthcare systems, and public health infrastructure. Despite the availability of treatments and vaccines, hospitalizations and deaths continue. Real-time surveillance of infection trends supports resource allocation and mitigation strategies, but reliable forecasting remains a challenge. While deep learning has advanced time-series forecasting, its effectiveness relies on large datasets, a significant obstacle given the pandemic's evolving nature. Most models use national or state-level data, limiting both dataset size and the granularity of insights. To address this, we propose the Fine-Grained Infection Forecast Network (FIGI-Net), a stacked bidirectional LSTM structure designed to leverage county-level data to produce daily forecasts up to two weeks in advance. FIGI-Net outperforms existing models, accurately predicting sudden changes such as new outbreaks or peaks, a capability many state-of-the-art models lack. This approach could enhance public health responses and outbreak preparedness.

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Publication Details

Journal
npj Digital Medicine
Published
2025-04-11
DOI
https://doi.org/10.1038/s41746-025-01606-1
Citations
4
Primary Topic
COVID-19 epidemiological studies
Type
article
Field-Weighted Citation Impact
5.47

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article

Fine-grained forecasting of COVID-19 trends at the county level in the United States

Junbong Jang, Tzu‐Hsi Song, Mauricio Santillana, Kwonmoo Lee et al.
4 citations
npj Digital Medicine
COVID-19 epidemiological studies
5.47
article

Fine-grained forecasting of COVID-19 trends at the county level in the United States

Junbong Jang, Tzu‐Hsi Song, Mauricio Santillana, Kwonmoo Lee, Xiang Pan, Leonardo Clemente
article en
4 citations

Abstract

The novel coronavirus (COVID-19) pandemic has had a devastating global impact, profoundly affecting daily life, healthcare systems, and public health infrastructure. Despite the availability of treatments and vaccines, hospitalizations and deaths continue. Real-time surveillance of infection trends supports resource allocation and mitigation strategies, but reliable forecasting remains a challenge. While deep learning has advanced time-series forecasting, its effectiveness relies on large datasets, a significant obstacle given the pandemic's evolving nature. Most models use national or state-level data, limiting both dataset size and the granularity of insights. To address this, we propose the Fine-Grained Infection Forecast Network (FIGI-Net), a stacked bidirectional LSTM structure designed to leverage county-level data to produce daily forecasts up to two weeks in advance. FIGI-Net outperforms existing models, accurately predicting sudden changes such as new outbreaks or peaks, a capability many state-of-the-art models lack. This approach could enhance public health responses and outbreak preparedness.

npj Digital MedicineVol. 8(1)
Boston Children's Hospital (US), Northeastern University (US), Harvard University (US)
National Institutes of Health, Centers for Disease Control and Prevention, National Institute of General Medical Sciences
Climate action
Openalex Percentile: Top 5%
COVID-19 epidemiological studies
5.47
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Fine-grained forecasting of COVID-19 trends at the county level in the United States — Junbong Jang, Tzu‐Hsi Song, et al. · npj Digital Medicine (2025) | TGRS Research Map | TGRS