NMR Crystallography Structure Determinations with <sup>1</sup>H Chemical Shifts. GIPAW DFT Calculation Quality Can Be Substantially Degraded, but Nearly Identical Outputs Relative to Benchmark Computations Are Obtained: Why and So What?
Nuclear magnetic resonance (NMR) crystallography may be used in various solid-state structural characterization tasks. For organic compounds in this context, proton isotropic chemical shifts [δ<sub>iso</sub>(<sup>1</sup>H)] are routinely used. It is typical to pair experimentally measured proton δ<sub>iso</sub> values with δ<sub>iso</sub> values that were computationally generated from crystal structure models. This can yield a δ<sub>iso</sub>(<sup>1</sup>H) root-mean-squared deviation (RMSD) value for each crystal structure model. In this study, we monitor the way in which gauge including projector augmented wave (GIPAW) density functional theory (DFT) computations of <sup>1</sup>H δ<sub>iso</sub> values can be influenced by the quality of the computational input parameters. We consider 126 computationally generated (using crystal structure prediction, CSP) crystal structures for three molecules: cocaine (30 structures), flutamide (21 structures), and ampicillin (75 structures). The quality parameters selected are the plane wave energy cutoff (<i>E</i><sub>cut</sub>), and the <i>k</i>-point grid used to sample reciprocal (i.e., momentum) space. We also probe the utility of performing one-parameter and two-parameter linear mappings for transforming computed hydrogen isotropic magnetic shielding values (σ<sub>iso</sub>) into computed δ<sub>iso</sub>(<sup>1</sup>H) values. We find that both <i>E</i><sub>cut</sub> and the <i>k</i>-point grid can be degraded substantially (e.g., <i>E</i><sub>cut</sub> ∼ 25 Ry) and yet still produce very similar computed δ<sub>iso</sub>(<sup>1</sup>H) values. We consider the mechanisms under GIPAW DFT that contribute to computed hydrogen σ<sub>iso</sub> values to help understand this robustness: many contributions are zero or cancel out when converting σ<sub>iso</sub> values to δ<sub>iso</sub>(<sup>1</sup>H) values <i>via</i> the linear mapping. The robust nature of computed δ<sub>iso</sub>(<sup>1</sup>H) values leads to consistent estimates of δ<sub>iso</sub>(<sup>1</sup>H) RMSD values. It is then demonstrated using cocaine and flutamide that when δ<sub>iso</sub>(<sup>1</sup>H) RMSD values are used in NMR crystallography tasks such as structure selection/determination, the quality of the GIPAW DFT computation can be severely degraded and still produce identical outcomes to those that used a more computationally intensive protocol. Ampicillin is selected as a practical example to probe how our findings might reasonably be applied in the structure determination of a complex organic molecule. We propose that relatively modest quality GIPAW DFT computations (i.e., <i>E</i><sub>cut</sub> = 35 Ry and a 1 × 1 × 1 <i>k</i>-point grid) may be used to first filter out obviously poor structure candidates. Subsequently, slightly higher quality GIPAW DFT computations can be used for structure selection/determination. Our findings indicate that it should be possible to, on average, reduce the computational resources required in such NMR crystallography tasks by approximately a factor of 3-4 in terms of CPU time.
Authors
- Khoa D. Nguyen (ORCID: https://orcid.org/0000-0003-0937-5354)
- Cory M. Widdifield (ORCID: https://orcid.org/0000-0002-1144-1026)
- Navjot Kaur (ORCID: https://orcid.org/0000-0001-6748-4861)
Institutions
- University of Regina (CA)
Publication Details
- Journal
- The Journal of Physical Chemistry A
- Published
- 2025-04-11
- DOI
- https://doi.org/10.1021/acs.jpca.5c00025
- Primary Topic
- Molecular spectroscopy and chirality
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- University of Regina
- Faculty of Graduate Studies and Research, University of Regina
- Alliance de recherche numérique du Canada
- Natural Sciences and Engineering Research Council of Canada