Automated parcellation and atlasing of the human subcortex with ultra-high resolution quantitative MRI

Brain mapping efforts are time-consuming and benefit from an incremental approach. This allows periodic updates with newly acquired data, analysis methods, and resulting atlases and automated delineation approaches. Here, we present a new release of the Amsterdam Ultra-high field adult lifespan database (AHEAD). The AHEAD dataset is now extended with 105 7 Tesla slab quantitative MRI contrasts covering the subcortex at a 0.5 mm isotropic resolution. The data were collected from 105 participants covering the adult lifespan together with the previously released whole-brain acquisitions. Whole-brain and slab data now have been co-registered, manually delineated, and used for the expansion of the Multi-contrast anatomical subcortical structures parcellation (MASSP) algorithm, which now allows the individual delineation of 19 additional anatomical structures. MASSP2.0 can be used to delineate 35 structures in individual brain contrasts, creating a total of 63 created masks. Quantitative MRI maps, derived probability maps for anatomical structures, as well as MASSP2.0 are now freely available for further analyses.

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Institutions

Publication Details

Journal
Imaging Neuroscience
Published
2025-01-01
DOI
https://doi.org/10.1162/imag_a_00560
Citations
4
Primary Topic
Advanced MRI Techniques and Applications
Type
article
Field-Weighted Citation Impact
4.08

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article

Automated parcellation and atlasing of the human subcortex with ultra-high resolution quantitative MRI

Josephine Maria Groot, Birte U. Forstmann, Anneke Alkemade, Martijn Mulder et al.
4 citations
Imaging Neuroscience
Advanced MRI Techniques and Applications
4.08
article

Automated parcellation and atlasing of the human subcortex with ultra-high resolution quantitative MRI

Josephine Maria Groot, Birte U. Forstmann, Anneke Alkemade, Martijn Mulder, Anne C. Trutti, Pierre‐Louis Bazin, Steven Miletić, Lysanne Groenewegen
article en
4 citations

Abstract

Brain mapping efforts are time-consuming and benefit from an incremental approach. This allows periodic updates with newly acquired data, analysis methods, and resulting atlases and automated delineation approaches. Here, we present a new release of the Amsterdam Ultra-high field adult lifespan database (AHEAD). The AHEAD dataset is now extended with 105 7 Tesla slab quantitative MRI contrasts covering the subcortex at a 0.5 mm isotropic resolution. The data were collected from 105 participants covering the adult lifespan together with the previously released whole-brain acquisitions. Whole-brain and slab data now have been co-registered, manually delineated, and used for the expansion of the Multi-contrast anatomical subcortical structures parcellation (MASSP) algorithm, which now allows the individual delineation of 19 additional anatomical structures. MASSP2.0 can be used to delineate 35 structures in individual brain contrasts, creating a total of 63 created masks. Quantitative MRI maps, derived probability maps for anatomical structures, as well as MASSP2.0 are now freely available for further analyses.

Imaging NeuroscienceVol. 3
Leiden University (NL), Utrecht University (NL), Hersenstichting (NL), UiT The Arctic University of Norway (NO), University of Amsterdam (NL)
EU Joint Programme – Neurodegenerative Disease Research, Strong, Nederlandse Organisatie voor Wetenschappelijk Onderzoek, European Research Council, Stichting voor de Technische Wetenschappen
Openalex Percentile: Top 7%
Advanced MRI Techniques and Applications
4.08
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