Optimized structure, Topology, Hirshfeld surface and Molecular docking analysis of some Pregnane derivatives

Pregnane, 17-ethylandrostane, a C21 crystalline steroid, is indirectly a parent of progesterone.Its derivatives show some interesting biological properties.Thus, an attempt has been made to identify a few structures from the CSD database (version: 2023) for their detailed crystallographic and computational analysis.The X-ray structures have been compared with their corresponding optimized structures.Theoretical analysis of each structure has been carried out using HOMO -LUMO, MESP, Hirshfeld surfaces, crystal voids, ELF, LOL, and molecular docking.The HOMO-LUMO energy gap indicates that all structures are chemically stable.The Hirshfeld surface highlights the presence of C-HO and O-HO intermolecular interactions.The crystal void analysis showed that the 2-hydroxy-5-pregnane-3,6,20-trione molecule exhibits good mechanical stability.The molecular docking with the target protein Estrogen Receptor Beta (1qkm) reveals that 5,6-Epoxy-20oxopregnan-3-yl acetate, on the basis of its better binding score, may be a potential candidate for anti-cancer activity.

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Publication Details

Journal
International Journal of Advanced Science and Engineering
Published
2025-03-29
DOI
https://doi.org/10.29294/ijase.11.3.2025.4120-4130
Primary Topic
Synthesis and biological activity
Type
article
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article

Optimized structure, Topology, Hirshfeld surface and Molecular docking analysis of some Pregnane derivatives

Neha Kumari, Rajni Kant
International Journal of Advanced Science and Engineering
Synthesis and biological activity
article

Optimized structure, Topology, Hirshfeld surface and Molecular docking analysis of some Pregnane derivatives

Neha Kumari, Rajni Kant
article en

Abstract

Pregnane, 17-ethylandrostane, a C21 crystalline steroid, is indirectly a parent of progesterone.Its derivatives show some interesting biological properties.Thus, an attempt has been made to identify a few structures from the CSD database (version: 2023) for their detailed crystallographic and computational analysis.The X-ray structures have been compared with their corresponding optimized structures.Theoretical analysis of each structure has been carried out using HOMO -LUMO, MESP, Hirshfeld surfaces, crystal voids, ELF, LOL, and molecular docking.The HOMO-LUMO energy gap indicates that all structures are chemically stable.The Hirshfeld surface highlights the presence of C-HO and O-HO intermolecular interactions.The crystal void analysis showed that the 2-hydroxy-5-pregnane-3,6,20-trione molecule exhibits good mechanical stability.The molecular docking with the target protein Estrogen Receptor Beta (1qkm) reveals that 5,6-Epoxy-20oxopregnan-3-yl acetate, on the basis of its better binding score, may be a potential candidate for anti-cancer activity.

International Journal of Advanced Science and EngineeringVol. 11(3)
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Openalex Percentile: Top 95%
Synthesis and biological activity
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