Termination sequence between an inducible promoter and ubiquitous chromatin opening element (UCOE) reduces gene expression leakage and silencing

This study reveals a novel limitation of A2UCOE in inducible systems, specifically its contribution to gene leakage, which compromise sensitive systems like direct reprogramming of iPSCs. The inclusion of an SV40 poly-A sequence provides a practical solution and genomic architecture to improve the functionality of A2UCOE-based circuits. It also suggests investigating how termination of transcription modulates gene silencing as a novel design parameter. These findings have significant implications for the design of robust gene circuits, particularly in applications involving iPSCs, regenerative medicine, and cell therapy.

Authors

Institutions

Publication Details

Journal
Journal of Biological Engineering
Published
2025-04-09
DOI
https://doi.org/10.1186/s13036-025-00499-8
Citations
4
Primary Topic
CRISPR and Genetic Engineering
Type
article
Field-Weighted Citation Impact
2.42

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Termination sequence between an inducible promoter and ubiquitous chromatin opening element (UCOE) reduces gene expression leakage and silencing

Tomoki Yanagi, J. Ayala, S. Jaramillo, David M. Truong et al.
4 citations
Journal of Biological Engineering
CRISPR and Genetic Engineering
2.42
article

Termination sequence between an inducible promoter and ubiquitous chromatin opening element (UCOE) reduces gene expression leakage and silencing

Tomoki Yanagi, J. Ayala, S. Jaramillo, David M. Truong, Shean Fu Phen, Deniz Ece Aydin
article en
4 citations

Abstract

This study reveals a novel limitation of A2UCOE in inducible systems, specifically its contribution to gene leakage, which compromise sensitive systems like direct reprogramming of iPSCs. The inclusion of an SV40 poly-A sequence provides a practical solution and genomic architecture to improve the functionality of A2UCOE-based circuits. It also suggests investigating how termination of transcription modulates gene silencing as a novel design parameter. These findings have significant implications for the design of robust gene circuits, particularly in applications involving iPSCs, regenerative medicine, and cell therapy.

Journal of Biological EngineeringVol. 19(1)
New York University (US)
National Institutes of Health, National Institute of Allergy and Infectious Diseases
Openalex Percentile: Top 12%
CRISPR and Genetic Engineering
2.42
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Termination sequence between an inducible promoter and ubiquitous chromatin opening element (UCOE) reduces gene expression leakage and silencing — Tomoki Yanagi, J. Ayala, et al. · Journal of Biological Engineering (2025) | TGRS Research Map | TGRS