Accelerating iterative ptychography with an integrated neural network

Electron ptychography is a powerful and versatile tool for high-resolution and dose-efficient imaging. Iterative reconstruction algorithms are powerful but also computationally expensive due to their relative complexity and the many hyperparameters that must be optimised. Gradient descent-based iterative ptychography is a popular method, but it may converge slowly when reconstructing low spatial frequencies. In this work, we present a method for accelerating a gradient descent-based iterative reconstruction algorithm by training a neural network (NN) that is applied in the reconstruction loop. The NN works in Fourier space and selectively boosts low spatial frequencies, thus enabling faster convergence in a manner similar to accelerated gradient descent algorithms. We discuss the difficulties that arise when incorporating a NN into an iterative reconstruction algorithm and show how they can be overcome with iterative training. We apply our method to simulated and experimental data of gold nanoparticles on amorphous carbon and show that we can significantly speed up ptychographic reconstruction of the nanoparticles.

Authors

Institutions

Publication Details

Journal
Journal of Microscopy
Published
2025-04-07
DOI
https://doi.org/10.1111/jmi.13407
Citations
1
Primary Topic
Advanced X-ray Imaging Techniques
Type
article
Field-Weighted Citation Impact
1.88

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Accelerating iterative ptychography with an integrated neural network

Arthur R. C. McCray, Stephanie M. Ribet, Colin Ophus, Georgios Varnavides
1 citations
Journal of Microscopy
Advanced X-ray Imaging Techniques
1.88
article

Accelerating iterative ptychography with an integrated neural network

Arthur R. C. McCray, Stephanie M. Ribet, Colin Ophus, Georgios Varnavides
article en
1 citations

Abstract

Electron ptychography is a powerful and versatile tool for high-resolution and dose-efficient imaging. Iterative reconstruction algorithms are powerful but also computationally expensive due to their relative complexity and the many hyperparameters that must be optimised. Gradient descent-based iterative ptychography is a popular method, but it may converge slowly when reconstructing low spatial frequencies. In this work, we present a method for accelerating a gradient descent-based iterative reconstruction algorithm by training a neural network (NN) that is applied in the reconstruction loop. The NN works in Fourier space and selectively boosts low spatial frequencies, thus enabling faster convergence in a manner similar to accelerated gradient descent algorithms. We discuss the difficulties that arise when incorporating a NN into an iterative reconstruction algorithm and show how they can be overcome with iterative training. We apply our method to simulated and experimental data of gold nanoparticles on amorphous carbon and show that we can significantly speed up ptychographic reconstruction of the nanoparticles.

Journal of MicroscopyVol. 300(2)
Lawrence Berkeley National Laboratory (US), Miller College (US), University of California, Berkeley (US), Stanford University (US)
U.S. Department of Energy, Adolph C. and Mary Sprague Miller Institute for Basic Research in Science, University of California Berkeley, National Energy Research Scientific Computing Center, Office of Science, Basic Energy Sciences
Openalex Percentile: Top 18%
Advanced X-ray Imaging Techniques
1.88
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Accelerating iterative ptychography with an integrated neural network — Arthur R. C. McCray, Stephanie M. Ribet, et al. · Journal of Microscopy (2025) | TGRS Research Map | TGRS