Signatures of glassy dynamics in highly ordered lipid bilayers with emergence of soft dynamic channels

Over the last few decades, extensive investigations on spatial and dynamic heterogeneity have been performed on carefully reconstituted biological lipid membranes. Characterizing the molecular features in heterogeneous membranes is extremely challenging due to the experimentally inaccessible time- and length-scales of these emergent systems. In this context, simulations can provide important insights into molecular-level interactions leading to membrane heterogeneity and associated functions. To that end, we use the non-affine displacement (NAD) framework (a concept borrowed from the physics of granular materials) to faithfully capture molecular-scale local membrane order in simulated heterogeneous bilayers. In our latest application of NAD, we investigate the temperature-dependent spatial and temporal organization on microsecond trajectories of liquid-ordered bilayer systems at all-atom resolution (DPPC/DOPC/CHOL: 0.55:0.15:0.30; 40 × 40 nm2 with a total of 5600 lipids and 2 × 106 atoms). Lateral organization in these large bilayer patches shows noticeable dynamic heterogeneity despite their liquid-ordered nature. Moreover, our NAD analyses reveal soft fluid channels within the tightly packed membrane reminiscent of the classical two-component Kob-Andersen glass-forming binary mixture. Hence, we characterized these systems using classical glass physics markers for dynamic heterogeneities such as overlap, four-point susceptibility, Van Hove, and intermediate scattering functions to quantify the multiple time scales underlying the lipid dynamics. Our analyses reveal that highly ordered membrane systems can have glass-like dynamics with distinct soft fluid channels inside them. Biologically, these dynamic channels could act as conduits for facilitating molecular encounters for biological functions even in highly ordered phases such as lipid nanodomains and rafts.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2025-04-08
DOI
https://doi.org/10.1063/5.0250190
Citations
2
Primary Topic
Lipid Membrane Structure and Behavior
Type
article
Field-Weighted Citation Impact
1.61

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article

Signatures of glassy dynamics in highly ordered lipid bilayers with emergence of soft dynamic channels

Sahithya S. Iyer, Anand Srivastava, Edward Lyman, Prathyush Poduval et al.
2 citations
The Journal of Chemical Physics
Lipid Membrane Structure and Behavior
1.61
article

Signatures of glassy dynamics in highly ordered lipid bilayers with emergence of soft dynamic channels

Sahithya S. Iyer, Anand Srivastava, Edward Lyman, Prathyush Poduval, Atreyee Banerjee, Harini Sureshkumar
article en
2 citations

Abstract

Over the last few decades, extensive investigations on spatial and dynamic heterogeneity have been performed on carefully reconstituted biological lipid membranes. Characterizing the molecular features in heterogeneous membranes is extremely challenging due to the experimentally inaccessible time- and length-scales of these emergent systems. In this context, simulations can provide important insights into molecular-level interactions leading to membrane heterogeneity and associated functions. To that end, we use the non-affine displacement (NAD) framework (a concept borrowed from the physics of granular materials) to faithfully capture molecular-scale local membrane order in simulated heterogeneous bilayers. In our latest application of NAD, we investigate the temperature-dependent spatial and temporal organization on microsecond trajectories of liquid-ordered bilayer systems at all-atom resolution (DPPC/DOPC/CHOL: 0.55:0.15:0.30; 40 × 40 nm2 with a total of 5600 lipids and 2 × 106 atoms). Lateral organization in these large bilayer patches shows noticeable dynamic heterogeneity despite their liquid-ordered nature. Moreover, our NAD analyses reveal soft fluid channels within the tightly packed membrane reminiscent of the classical two-component Kob-Andersen glass-forming binary mixture. Hence, we characterized these systems using classical glass physics markers for dynamic heterogeneities such as overlap, four-point susceptibility, Van Hove, and intermediate scattering functions to quantify the multiple time scales underlying the lipid dynamics. Our analyses reveal that highly ordered membrane systems can have glass-like dynamics with distinct soft fluid channels inside them. Biologically, these dynamic channels could act as conduits for facilitating molecular encounters for biological functions even in highly ordered phases such as lipid nanodomains and rafts.

The Journal of Chemical PhysicsVol. 162(14)
University of Freiburg (DE), University of Chicago (US), Max Planck Institute for Polymer Research (DE), Indian Institute of Science Bangalore (IN), University of Delaware (US)
Department of Biotechnology, Ministry of Science and Technology, India, Department of Science and Technology, Ministry of Science and Technology, India, The Wellcome Trust DBT India Alliance, Science and Engineering Research Board, Division of Molecular and Cellular Biosciences
Openalex Percentile: Top 18%
Lipid Membrane Structure and Behavior
1.61
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