How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons

We investigate the locality of magnetic response in polycyclic aromatic molecules using a novel deep-learning approach. Our method employs graph neural networks (GNNs) with a graph-of-rings representation to predict nucleus independent chemical shifts (NICS) in the space around the molecule. We train a series of models, each time reducing the size of the largest molecules used in training. The accuracy of prediction remains high (MAE < 0.5 ppm), even when training the model only on molecules with up to four rings, thus providing strong evidence for the locality of magnetic response. To overcome the known problem of generalization of GNNs, we implement a k-hop expansion strategy and succeed in achieving accurate predictions for molecules with up to 15 rings (almost 4 times the size of the largest training example). Our findings have implications for understanding the magnetic response in complex molecules and demonstrate a promising approach to overcoming GNN scalability limitations. Furthermore, the trained models enable rapid characterization, without the need for more expensive DFT calculations.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2025-04-08
DOI
https://doi.org/10.1063/5.0257558
Primary Topic
Synthesis and Properties of Aromatic Compounds
Type
article
Field-Weighted Citation Impact
0.00

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article

How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons

Alex Bronstein, Renana Gershoni‐Poranne, Sabyasachi Chakraborty, Yair Davidson et al.
The Journal of Chemical Physics
Synthesis and Properties of Aromatic Compounds
article

How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons

Alex Bronstein, Renana Gershoni‐Poranne, Sabyasachi Chakraborty, Yair Davidson, Aviad Philipp
article en

Abstract

We investigate the locality of magnetic response in polycyclic aromatic molecules using a novel deep-learning approach. Our method employs graph neural networks (GNNs) with a graph-of-rings representation to predict nucleus independent chemical shifts (NICS) in the space around the molecule. We train a series of models, each time reducing the size of the largest molecules used in training. The accuracy of prediction remains high (MAE < 0.5 ppm), even when training the model only on molecules with up to four rings, thus providing strong evidence for the locality of magnetic response. To overcome the known problem of generalization of GNNs, we implement a k-hop expansion strategy and succeed in achieving accurate predictions for molecules with up to 15 rings (almost 4 times the size of the largest training example). Our findings have implications for understanding the magnetic response in complex molecules and demonstrate a promising approach to overcoming GNN scalability limitations. Furthermore, the trained models enable rapid characterization, without the need for more expensive DFT calculations.

The Journal of Chemical PhysicsVol. 162(14)
Institute of Science and Technology Austria (AT), Technion – Israel Institute of Technology (IL)
Branco Weiss Fellowship – Society in Science, Israel Science Foundation, HORIZON EUROPE European Research Council
Openalex Percentile: Top 95%
Synthesis and Properties of Aromatic Compounds
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