The chromosome-level genome of water hyacinth (Eichhornia crassipes)

A chromosome-level genome for water hyacinth was constructed by combing MGI short-reads sequencing, PacBio HiFi (High-fidelity) sequencing, and Hi-C sequencing, which resulted in ca. 1132.2 Mb in size the contig and scaffold N50 length of 18.76 Mb and 69.84 Mb, respectively. A total of 1024.36 Mb (90.47%) of the assembled sequences were anchored to 16 pseudochromosomes, dividing into subgenome A (468.72 Mb in size) and subgenome B (555.64 Mb in size). A total of 57,683 protein-coding genes were predicted, including 25,445 protein-coding genes for subgenome A and 27,992 protein-coding genes for subgenome B. Furthermore, the LAI and QV scores of the water hyacinth genome were 12.32 and 48.91, respectively.

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Publication Details

Journal
BMC Genomic Data
Published
2025-04-09
DOI
https://doi.org/10.1186/s12863-025-01317-2
Citations
2
Primary Topic
Biological Control of Invasive Species
Type
article
Field-Weighted Citation Impact
3.34

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article

The chromosome-level genome of water hyacinth (Eichhornia crassipes)

Zhihao Qian, Jingshan Yang, Zhizhong Li, Jinming Chen
2 citations
BMC Genomic Data
Biological Control of Invasive Species
3.34
article

The chromosome-level genome of water hyacinth (Eichhornia crassipes)

Zhihao Qian, Jingshan Yang, Zhizhong Li, Jinming Chen
article en
2 citations

Abstract

A chromosome-level genome for water hyacinth was constructed by combing MGI short-reads sequencing, PacBio HiFi (High-fidelity) sequencing, and Hi-C sequencing, which resulted in ca. 1132.2 Mb in size the contig and scaffold N50 length of 18.76 Mb and 69.84 Mb, respectively. A total of 1024.36 Mb (90.47%) of the assembled sequences were anchored to 16 pseudochromosomes, dividing into subgenome A (468.72 Mb in size) and subgenome B (555.64 Mb in size). A total of 57,683 protein-coding genes were predicted, including 25,445 protein-coding genes for subgenome A and 27,992 protein-coding genes for subgenome B. Furthermore, the LAI and QV scores of the water hyacinth genome were 12.32 and 48.91, respectively.

BMC Genomic DataVol. 26(1)
Wuhan Botanical Garden (CN), University of Chinese Academy of Sciences (CN)
Chinese Academy of Sciences
Clean water and sanitation
Openalex Percentile: Top 10%
Biological Control of Invasive Species
3.34
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