Practical considerations for data exploration in quantitative cell biology

Data exploration is an essential step in quantitative cell biology, bridging raw data and scientific insights. Unlike polished, published figures, effective data exploration requires a flexible, hands-on approach that reveals trends, identifies outliers and refines hypotheses. This Opinion offers simple, practical advice for building a structured data exploration workflow, drawing on the authors' personal experience in analyzing bioimage datasets. In addition, the increasing availability of generative artificial intelligence and large language models makes coding and improving data workflows easier than ever before. By embracing these practices, researchers can streamline their workflows, produce more reliable conclusions and foster a collaborative, transparent approach to data analysis in cell biology.

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Publication Details

Journal
Journal of Cell Science
Published
2025-04-01
DOI
https://doi.org/10.1242/jcs.263801
Citations
3
Primary Topic
Cell Image Analysis Techniques
Type
article
Field-Weighted Citation Impact
4.90

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article

Practical considerations for data exploration in quantitative cell biology

Guillaume Jacquemet, Joanna W. Pylvänäinen, Hanna Grobe
3 citations
Journal of Cell Science
Cell Image Analysis Techniques
4.90
article

Practical considerations for data exploration in quantitative cell biology

Guillaume Jacquemet, Joanna W. Pylvänäinen, Hanna Grobe
article en
3 citations

Abstract

Data exploration is an essential step in quantitative cell biology, bridging raw data and scientific insights. Unlike polished, published figures, effective data exploration requires a flexible, hands-on approach that reveals trends, identifies outliers and refines hypotheses. This Opinion offers simple, practical advice for building a structured data exploration workflow, drawing on the authors' personal experience in analyzing bioimage datasets. In addition, the increasing availability of generative artificial intelligence and large language models makes coding and improving data workflows easier than ever before. By embracing these practices, researchers can streamline their workflows, produce more reliable conclusions and foster a collaborative, transparent approach to data analysis in cell biology.

Journal of Cell ScienceVol. 138(7)
Åbo Akademi University (FI), University of Turku (FI), Turku Centre for Computer Science (FI)
Academy of Finland, Syöpäjärjestöt, Åbo Akademi
Openalex Percentile: Top 6%
Cell Image Analysis Techniques
4.90
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Practical considerations for data exploration in quantitative cell biology — Guillaume Jacquemet, Joanna W. Pylvänäinen, et al. · Journal of Cell Science (2025) | TGRS Research Map | TGRS