How Transcriptional Bursting and mRNA Production Affect Precise Timing of Cell Lysis Phenomena

Bacterial viruses infect bacterial cells and stimulate the production of holin proteins that accumulate in the cellular membranes. When the number of such proteins reaches a threshold, the membrane permeabilizes and the cell is destroyed in the process known as cell lysis. Experimental studies indicate that cell lysis occurs at specific times, although the underlying molecular mechanisms of such precise timing remain not well understood. Recently, a theoretical framework has been introduced to explain these phenomena as a coupling between stochastic processes of holins accumulation in the membrane and breaking the membrane that leads to threshold behavior. However, this approach does not account for many biologically important processes in cell lysis. In this work, we investigated the role of transcriptional bursting and mRNA production on the dynamics of cell lysis. The original stochastic framework is extended, allowing us to evaluate the cell lysis dynamics under more realistic biological conditions using analytical calculations and Monte Carlo computer simulations. It is shown explicitly that the random processes of transcription bursting and mRNA production do not affect the threshold-like dynamics of cell lysis, although they influence the absolute values of the maximal thresholds and their distributions. It is also found that the effect of mRNA production is generally stronger than the effect due to transcriptional bursting. Physical-chemical arguments to explain these observations are presented. Thus, our theoretical analysis suggests that the precise timing of cell lysis is a robust phenomenon despite involving multiple random biochemical processes. Our theoretical approach clarifies some important mechanistic aspects of complex biological processes of cell lysis.

Authors

Institutions

Publication Details

Journal
The Journal of Physical Chemistry B
Published
2025-04-07
DOI
https://doi.org/10.1021/acs.jpcb.5c01029
Primary Topic
Bacterial Genetics and Biotechnology
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

How Transcriptional Bursting and mRNA Production Affect Precise Timing of Cell Lysis Phenomena

Zhiyuan Lyu, Anatoly B. Kolomeisky, Anupam Mondal
The Journal of Physical Chemistry B
Bacterial Genetics and Biotechnology
article

How Transcriptional Bursting and mRNA Production Affect Precise Timing of Cell Lysis Phenomena

Zhiyuan Lyu, Anatoly B. Kolomeisky, Anupam Mondal
article en

Abstract

Bacterial viruses infect bacterial cells and stimulate the production of holin proteins that accumulate in the cellular membranes. When the number of such proteins reaches a threshold, the membrane permeabilizes and the cell is destroyed in the process known as cell lysis. Experimental studies indicate that cell lysis occurs at specific times, although the underlying molecular mechanisms of such precise timing remain not well understood. Recently, a theoretical framework has been introduced to explain these phenomena as a coupling between stochastic processes of holins accumulation in the membrane and breaking the membrane that leads to threshold behavior. However, this approach does not account for many biologically important processes in cell lysis. In this work, we investigated the role of transcriptional bursting and mRNA production on the dynamics of cell lysis. The original stochastic framework is extended, allowing us to evaluate the cell lysis dynamics under more realistic biological conditions using analytical calculations and Monte Carlo computer simulations. It is shown explicitly that the random processes of transcription bursting and mRNA production do not affect the threshold-like dynamics of cell lysis, although they influence the absolute values of the maximal thresholds and their distributions. It is also found that the effect of mRNA production is generally stronger than the effect due to transcriptional bursting. Physical-chemical arguments to explain these observations are presented. Thus, our theoretical analysis suggests that the precise timing of cell lysis is a robust phenomenon despite involving multiple random biochemical processes. Our theoretical approach clarifies some important mechanistic aspects of complex biological processes of cell lysis.

The Journal of Physical Chemistry BVol. 129(15)
Center for Theoretical Biological Physics (US), Rice University (US)
Welch Foundation, Division of Physics
Zero hunger
Openalex Percentile: Top 92%
Bacterial Genetics and Biotechnology
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.