Information Gain Limit of Biomolecular Computation

Biomolecules stochastically occupy different configurations that correspond to distinct functional states. Changing biochemical inputs such as rate constants alters the output probability distribution of configurations, and thus constitutes a form of computation. In the cell, such computations are often coupled to thermodynamic forces such as ATP hydrolysis that drive systems far from equilibrium, resulting in energy expenditure even during times when computations are not being performed. The information-theoretic advantage of this costly computational paradigm is unclear. Here we introduce a theoretical framework showing how much the thermodynamic force enables changes in probability distributions, quantified by the information gain, beyond what is possible at equilibrium. Using this framework, we derive a general expression relating the force to the maximum information gain in an arbitrary computation, revealing how small input changes can exponentially alter outputs. We numerically show that biomolecular systems can closely approach this universal bound, illustrating how energy expenditure is needed to achieve the information processing capabilities observed in nature.

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Publication Details

Journal
Physical Review Letters
Published
2025-04-07
DOI
https://doi.org/10.1103/physrevlett.134.148401
Citations
3
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
2.42

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article

Information Gain Limit of Biomolecular Computation

Milo M. Lin, Easun Arunachalam
3 citations
Physical Review Letters
Gene Regulatory Network Analysis
2.42
article

Information Gain Limit of Biomolecular Computation

Milo M. Lin, Easun Arunachalam
article en
3 citations

Abstract

Biomolecules stochastically occupy different configurations that correspond to distinct functional states. Changing biochemical inputs such as rate constants alters the output probability distribution of configurations, and thus constitutes a form of computation. In the cell, such computations are often coupled to thermodynamic forces such as ATP hydrolysis that drive systems far from equilibrium, resulting in energy expenditure even during times when computations are not being performed. The information-theoretic advantage of this costly computational paradigm is unclear. Here we introduce a theoretical framework showing how much the thermodynamic force enables changes in probability distributions, quantified by the information gain, beyond what is possible at equilibrium. Using this framework, we derive a general expression relating the force to the maximum information gain in an arbitrary computation, revealing how small input changes can exponentially alter outputs. We numerically show that biomolecular systems can closely approach this universal bound, illustrating how energy expenditure is needed to achieve the information processing capabilities observed in nature.

Physical Review LettersVol. 134(14)
Harvard University Press (US), Southwestern Medical Center (US), The University of Texas Southwestern Medical Center (US)
Alfred P. Sloan Foundation, University of Texas at Austin, Chan Zuckerberg Initiative
Openalex Percentile: Top 12%
Gene Regulatory Network Analysis
2.42
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