<scp>DNA</scp> Extraction‐Free Loop‐Mediated Isothermal Amplification for Rapid and Sensitive Detection of <i>Pratylenchus zeae</i>

ABSTRACT Pratylenchus zeae is a globally distributed plant‐parasitic nematode with substantial economic impact on agriculture. To enable sensitive, accurate and rapid detection of P. zeae , a loop‐mediated isothermal amplification (LAMP) assay targeting the 28S rDNA sequence was developed. This assay, using the Pzeae primer set in a 4:1 ratio of inner to outer pairs and the WarmStart Colorimetric LAMP 2× Master Mix, successfully detected P. zeae collected in different geographic regions of Brazil, a country characterised by its large area and ecological diversity. The specificity of the LAMP assay was validated using DNA from 11 other species, including species within the genera Pratylenchus , Meloidogyne , Aphelenchoides , Heterodera and Helicotylenchus . The optimal assay conditions were established at 60°C for 60 min, achieving a detection sensitivity of up to 200 fg μL −1 (~2 × 10 −7 of a nematode) of DNA. Thus, this assay demonstrated greater sensitivity than conventional and quantitative PCR. Moreover, it effectively detected P. zeae directly from infected roots, eliminating the need for toxic compounds such as phenol and chloroform. This study has developed the first tool for direct detection of a plant‐parasitic nematode without DNA extraction and offers a practical and rapid solution for detecting P. zeae even in remote locations. The LAMP detection method will assist the development of effective strategies for management of P. zeae in the field.

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Publication Details

Journal
Plant Pathology
Published
2025-04-04
DOI
https://doi.org/10.1111/ppa.14102
Citations
1
Primary Topic
Nematode management and characterization studies
Type
article
Field-Weighted Citation Impact
1.75

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article

DNA Extraction‐Free Loop‐Mediated Isothermal Amplification for Rapid and Sensitive Detection of Pratylenchus zeae

Maurício Rossato, Larissa Cavalcante Almeida, Thaís Ribeiro Santiago
1 citations
Plant Pathology
Nematode management and characterization studies
1.75
article

DNA Extraction‐Free Loop‐Mediated Isothermal Amplification for Rapid and Sensitive Detection of Pratylenchus zeae

Maurício Rossato, Larissa Cavalcante Almeida, Thaís Ribeiro Santiago
article en
1 citations

Abstract

ABSTRACT Pratylenchus zeae is a globally distributed plant‐parasitic nematode with substantial economic impact on agriculture. To enable sensitive, accurate and rapid detection of P. zeae , a loop‐mediated isothermal amplification (LAMP) assay targeting the 28S rDNA sequence was developed. This assay, using the Pzeae primer set in a 4:1 ratio of inner to outer pairs and the WarmStart Colorimetric LAMP 2× Master Mix, successfully detected P. zeae collected in different geographic regions of Brazil, a country characterised by its large area and ecological diversity. The specificity of the LAMP assay was validated using DNA from 11 other species, including species within the genera Pratylenchus , Meloidogyne , Aphelenchoides , Heterodera and Helicotylenchus . The optimal assay conditions were established at 60°C for 60 min, achieving a detection sensitivity of up to 200 fg μL −1 (~2 × 10 −7 of a nematode) of DNA. Thus, this assay demonstrated greater sensitivity than conventional and quantitative PCR. Moreover, it effectively detected P. zeae directly from infected roots, eliminating the need for toxic compounds such as phenol and chloroform. This study has developed the first tool for direct detection of a plant‐parasitic nematode without DNA extraction and offers a practical and rapid solution for detecting P. zeae even in remote locations. The LAMP detection method will assist the development of effective strategies for management of P. zeae in the field.

Plant PathologyVol. 74(5)
Universidade de Brasília (BR)
Conselho Nacional de Desenvolvimento Científico e Tecnológico, Fundação de Apoio à Pesquisa do Distrito Federal
Openalex Percentile: Top 16%
Nematode management and characterization studies
1.75
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<scp>DNA</scp> Extraction‐Free Loop‐Mediated Isothermal Amplification for Rapid and Sensitive Detection of <i>Pratylenchus zeae</i> — Maurício Rossato, Larissa Cavalcante Almeida, et al. · Plant Pathology (2025) | TGRS Research Map | TGRS