Diploid chromosome-level genome assembly and annotation for Lycorma delicatula

The spotted lanternfly (Lycorma delicatula) is a planthopper species (Hemiptera: Fulgoridae) native to China but invasive in South Korea, Japan, and the United States where it is a significant threat to agriculture. Genomic resources are critical to both management of this species and understanding the genomic characteristics of successful invaders. We report an annotated, haplotype-phased, chromosome-level genome assembly for the spotted lanternfly using PacBio long-read sequencing, Hi-C technology, and RNA-seq. The 2.2 Gbp genome comprises 13 chromosomes, and whole genome resequencing of eighty-two adults indicated chromosome four as the sex chromosome and a corresponding XO sex-determination system. We identified over 12,000 protein-coding genes and performed functional annotation, facilitating the identification of candidate genes that may hold importance for spotted lanternfly control. The assemblies and annotations were highly complete with over 96% of BUSCO genes complete regardless of the database (i.e., Eukaryota, Arthropoda, Insecta). This reference-quality genome will serve as an important resource for development and optimization of management practices for the spotted lanternfly and invasive species genomics as a whole.

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Publication Details

Journal
Scientific Data
Published
2025-04-05
DOI
https://doi.org/10.1038/s41597-025-04854-8
Citations
1
Primary Topic
Plant Taxonomy and Phylogenetics
Type
article
Field-Weighted Citation Impact
3.03

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article

Diploid chromosome-level genome assembly and annotation for Lycorma delicatula

Kristin M. Winchell, Brenna A. Levine, Anthony A. Snead, Meng Fang et al.
1 citations
Scientific Data
Plant Taxonomy and Phylogenetics
3.03
article

Diploid chromosome-level genome assembly and annotation for Lycorma delicatula

Kristin M. Winchell, Brenna A. Levine, Anthony A. Snead, Meng Fang, Nicolas Largotta
article en
1 citations

Abstract

The spotted lanternfly (Lycorma delicatula) is a planthopper species (Hemiptera: Fulgoridae) native to China but invasive in South Korea, Japan, and the United States where it is a significant threat to agriculture. Genomic resources are critical to both management of this species and understanding the genomic characteristics of successful invaders. We report an annotated, haplotype-phased, chromosome-level genome assembly for the spotted lanternfly using PacBio long-read sequencing, Hi-C technology, and RNA-seq. The 2.2 Gbp genome comprises 13 chromosomes, and whole genome resequencing of eighty-two adults indicated chromosome four as the sex chromosome and a corresponding XO sex-determination system. We identified over 12,000 protein-coding genes and performed functional annotation, facilitating the identification of candidate genes that may hold importance for spotted lanternfly control. The assemblies and annotations were highly complete with over 96% of BUSCO genes complete regardless of the database (i.e., Eukaryota, Arthropoda, Insecta). This reference-quality genome will serve as an important resource for development and optimization of management practices for the spotted lanternfly and invasive species genomics as a whole.

Scientific DataVol. 12(1)
American Museum of Natural History (US), Kean University (US), New York University (US)
Division of Biological Infrastructure
Zero hunger
Openalex Percentile: Top 12%
Plant Taxonomy and Phylogenetics
3.03
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