A disease-specific convergence of host and Epstein–Barr virus genetics in multiple sclerosis
Recent sero-epidemiological studies have strengthened the hypothesis that Epstein-Barr virus (EBV) may be a causal factor in multiple sclerosis (MS). Given the complexity of the EBV-host interaction, various mechanisms may be responsible for the disease pathogenesis. Furthermore, it remains unclear whether this is a disease-specific process. Here, we showed that genes encoding EBV interactors are enriched in loci associated with MS but not with other diseases and in prioritized therapeutic targets. Analyses of MS blood and brain transcriptomes confirmed a dysregulation of MS-associated EBV interactors affecting the CD40 pathway. Such interactors were strongly enriched in binding sites for the EBV nuclear antigen 2 (EBNA2) viral transcriptional regulator, often in colocalization with CCCTC binding factor (CTCF) and RNA Polymerase II Subunit A (POLR2A). EBNA2 was expressed in the MS brain. The 1.2 EBNA2 allele downregulated the expression of the CD40 MS-associated gene analogously to the CD40 MS-risk variant. Finally, we showed that the 1.2 EBNA2 allele associates with the risk of MS. This study delineates how host and viral genetic variability converge in MS-specific pathogenetic mechanisms.
Authors
- Michela Ferraldeschi (ORCID: https://orcid.org/0000-0001-8157-795X)
- Gil McVean (ORCID: https://orcid.org/0000-0002-5012-4162)
- Aiden Corvin (ORCID: https://orcid.org/0000-0001-6717-4089)
- Daniela Francesca Angelini (ORCID: https://orcid.org/0000-0003-4552-9226)
- Federica Esposito (ORCID: https://orcid.org/0000-0002-8521-4627)
- John A. Todd (ORCID: https://orcid.org/0000-0003-2740-8148)
- Arianna Fornasiero (ORCID: https://orcid.org/0000-0002-4025-0034)
- Diego Centonze (ORCID: https://orcid.org/0000-0002-8390-8545)
- Sarah Edkins (ORCID: https://orcid.org/0000-0003-0717-1972)
- Emma Gray (ORCID: https://orcid.org/0009-0008-6542-6535)
- Noriko Isobe (ORCID: https://orcid.org/0000-0001-9525-4254)
- G. J. Stewart
- Matthew A. Brown (ORCID: https://orcid.org/0000-0003-0538-8211)
- Richard D. Pearson (ORCID: https://orcid.org/0000-0002-7386-3566)
- Robert J. Plomin (ORCID: https://orcid.org/0000-0002-0756-3629)
- Eleni Giannoulatou (ORCID: https://orcid.org/0000-0002-7084-6736)
- An Goris (ORCID: https://orcid.org/0000-0002-1276-6682)
- Jeannette Lechner‐Scott (ORCID: https://orcid.org/0000-0002-3850-447X)
- Tomas Olsson (ORCID: https://orcid.org/0000-0002-2938-1877)
- Audrey Duncanson
- Jonathan L. Haines (ORCID: https://orcid.org/0000-0002-4351-4728)
- Efthimios Dardiotis (ORCID: https://orcid.org/0000-0003-2957-641X)
- Bernhard Hemmer (ORCID: https://orcid.org/0000-0001-5985-6784)
- Grant P. Parnell (ORCID: https://orcid.org/0000-0002-2898-0253)
- Juan P. Casas (ORCID: https://orcid.org/0000-0002-1898-6862)
- Pankaj Trivedi (ORCID: https://orcid.org/0000-0001-9574-6304)
- Serge Dronov (ORCID: https://orcid.org/0000-0002-3621-484X)
- Riccardo Bigi (ORCID: https://orcid.org/0000-0001-5660-475X)
- Sara Widaa
- Marco Patrone (ORCID: https://orcid.org/0000-0002-5164-2877)
- Richard C. Trembath (ORCID: https://orcid.org/0000-0003-0550-3400)
- Dario Di Silvestre (ORCID: https://orcid.org/0000-0002-7143-6229)
- Serena Martire (ORCID: https://orcid.org/0000-0001-6889-888X)
- Eleni Anastasiadou (ORCID: https://orcid.org/0000-0003-0212-6734)
- Virginia Rinaldi (ORCID: https://orcid.org/0000-0001-8074-6790)
- Loukas Moutsianas (ORCID: https://orcid.org/0000-0001-5453-345X)
- Rathi Ravindrarajah (ORCID: https://orcid.org/0000-0003-4875-4912)
- Doriana Landi (ORCID: https://orcid.org/0000-0002-3309-8417)
- Gabriel Cerono (ORCID: https://orcid.org/0000-0002-9411-2526)
- Francesca Chiara Pignalosa (ORCID: https://orcid.org/0009-0004-7171-7786)
- Simona Malucchi (ORCID: https://orcid.org/0000-0003-3624-5715)
- Pierre‐Antoine Gourraud (ORCID: https://orcid.org/0000-0003-1131-9554)
- Sarah Hunt (ORCID: https://orcid.org/0000-0002-8350-1235)
- Antonio Uccelli (ORCID: https://orcid.org/0000-0002-2008-6038)
- Alessia Di Sapio (ORCID: https://orcid.org/0000-0002-5575-7567)
- Michelle Ricketts
- Sundararajan Srinivasan (ORCID: https://orcid.org/0000-0002-3387-9889)
- Lorena Lorefice (ORCID: https://orcid.org/0000-0003-2050-2908)
- Jacob L. McCauley (ORCID: https://orcid.org/0000-0002-1805-1733)
- Joost Smolders (ORCID: https://orcid.org/0000-0001-9766-8661)
- Philip L. De Jager (ORCID: https://orcid.org/0000-0002-8057-2505)
- Raffaella Pizzolato Umeton (ORCID: https://orcid.org/0000-0003-2975-1214)
- Luca Battistini (ORCID: https://orcid.org/0000-0002-6488-4891)
- M. L. Perez
- Damjan Vukcevic (ORCID: https://orcid.org/0000-0001-7780-9586)
- Rosella Mechelli (ORCID: https://orcid.org/0000-0001-5842-3100)
- Marco Salvetti (ORCID: https://orcid.org/0000-0002-0501-8803)
- Inês Barroso (ORCID: https://orcid.org/0000-0001-5800-4520)
- Roland Martinꝉ (ORCID: https://orcid.org/0000-0002-0982-1329)
- Nick Craddock
- Maria Chiara Buscarinu (ORCID: https://orcid.org/0000-0002-4839-1528)
- Paola de Candia (ORCID: https://orcid.org/0000-0003-4767-446X)
- Stephen Leslie (ORCID: https://orcid.org/0000-0003-3511-3470)
- Jennifer Liddle (ORCID: https://orcid.org/0000-0003-1059-1230)
- Hanne F. Harbo (ORCID: https://orcid.org/0000-0002-6047-0122)
- Andrew Tym Hattersley (ORCID: https://orcid.org/0000-0001-5620-473X)
- Alexander Dilthey (ORCID: https://orcid.org/0000-0002-6394-4581)
- Roland G. Henry (ORCID: https://orcid.org/0000-0002-8232-7562)
- Nicholas William Wood (ORCID: https://orcid.org/0000-0002-9500-3348)
- Matti Pirinen (ORCID: https://orcid.org/0000-0002-1664-1350)
- Richard Reynolds (ORCID: https://orcid.org/0000-0003-4622-4694)
- Nikolaos A. Patsopoulos (ORCID: https://orcid.org/0000-0003-3757-8941)
- Roberta Magliozzi (ORCID: https://orcid.org/0000-0001-8284-7763)
- Michael Khalil (ORCID: https://orcid.org/0000-0002-5350-3328)
- Miles Parkes (ORCID: https://orcid.org/0000-0002-6467-0631)
- Bruce Taylor (ORCID: https://orcid.org/0000-0003-2807-0070)
- Céline Bellenguez (ORCID: https://orcid.org/0000-0002-1240-7874)
- Gianmarco Bellucci (ORCID: https://orcid.org/0000-0002-2635-1699)
- Alistair S. Hall (ORCID: https://orcid.org/0000-0003-0306-7887)
- Janna Saarela (ORCID: https://orcid.org/0000-0002-0853-6219)
- Ingrid Skelton Kockum (ORCID: https://orcid.org/0000-0002-0867-4726)
- Sara Ilari (ORCID: https://orcid.org/0000-0002-6756-6530)
- Matthew Waller
- Lars S. Alfredsson (ORCID: https://orcid.org/0000-0003-1688-6697)
- Garrett Hellenthal (ORCID: https://orcid.org/0000-0002-5760-8020)
- Jenefer M. Blackwell (ORCID: https://orcid.org/0000-0002-0784-7277)
- Mark J. Caulfield (ORCID: https://orcid.org/0000-0001-9295-3594)
- Simon Potter (ORCID: https://orcid.org/0000-0003-4208-4102)
- Stephen Sawcer (ORCID: https://orcid.org/0000-0001-7685-0974)
- Gisella Guerrera (ORCID: https://orcid.org/0000-0002-3467-6469)
- Matthew Gillman (ORCID: https://orcid.org/0000-0002-2340-6930)
- Giovanni Ristori (ORCID: https://orcid.org/0000-0002-6598-6777)
- Naomi E. Hammond (ORCID: https://orcid.org/0000-0002-6559-7747)
- Paul A. Weston (ORCID: https://orcid.org/0000-0002-9720-8283)
- Alastair Compston (ORCID: https://orcid.org/0000-0002-0734-0185)
- Silvia Romano (ORCID: https://orcid.org/0000-0003-0499-8843)
- V. Wee Yong (ORCID: https://orcid.org/0000-0002-2600-3563)
- Rogier Hintzen (ORCID: https://orcid.org/0000-0003-2585-3643)
- Lisa F. Barcellos (ORCID: https://orcid.org/0000-0002-0303-3479)
- Gavin Band (ORCID: https://orcid.org/0000-0002-1710-9024)
- Panos Deloukas (ORCID: https://orcid.org/0000-0001-9251-070X)
- Frauke Zipp (ORCID: https://orcid.org/0000-0002-1231-1928)
- G. Mark Lathrop
- Luisa Bernardinelli (ORCID: https://orcid.org/0000-0002-7551-6664)
- Giuseppe Matarese (ORCID: https://orcid.org/0000-0001-9429-0616)
- Cinthia Farina (ORCID: https://orcid.org/0000-0002-4466-9676)
- Pierluigi Mauri (ORCID: https://orcid.org/0000-0003-4364-0393)
- B. Fontaine
- Cordelia Langford (ORCID: https://orcid.org/0000-0002-6940-501X)
- Eleonora E. Cocco (ORCID: https://orcid.org/0000-0002-3878-8820)
- Helle Bach Søndergaard (ORCID: https://orcid.org/0000-0001-9435-0658)
- Filippo Martinelli Boneschi (ORCID: https://orcid.org/0000-0002-9955-1368)
- Jorge R. Oksenberg (ORCID: https://orcid.org/0000-0002-3613-9544)
- Elvira Bramon (ORCID: https://orcid.org/0000-0003-1369-5983)
- Neil P. Robertson (ORCID: https://orcid.org/0000-0002-5409-4909)
- Manuel Comabella (ORCID: https://orcid.org/0000-0002-2373-6657)
- Renato Umeton (ORCID: https://orcid.org/0000-0002-5561-6932)
- Janusz Jankowski (ORCID: https://orcid.org/0000-0003-2130-9181)
- Chris Cotsapas (ORCID: https://orcid.org/0000-0002-7772-5910)
- Anna Rautanen
- Adrian J. Ivinson
- Seema Kalra (ORCID: https://orcid.org/0000-0001-5405-2445)
- Peter Donnelly (ORCID: https://orcid.org/0000-0001-7620-0218)
- Zhan Su
- Suzannah J. Bumpstead
- Amy Strange
- Nilesh J. Samani
- Jane Worthington (ORCID: https://orcid.org/0000-0003-0544-042X)
- Stephen L. Hauser (ORCID: https://orcid.org/0000-0002-4932-4001)
- Ananth C. Viswanathan
- Chris C.A. Spencer
- Bénédicte Dubois
- Hugh S. Markus
- Colin Freeman
- D A Hafler
- Annette Oturai
- Pamela Whittaker
- Owen T McCann
- Hannah Blackburn
- Giorgos M. Hadjigeorgiou
- Margaret A. Pericak-Vance
- David A. Clayton
- David Booth
- Alagurevathi Jayakumar
- Gerolama Alessandra Marfia
- Rhian Gwilliam
- Martin Farrall
- Mark McCarthy
Institutions
- University of Rome Tor Vergata (IT)
- University of Verona (IT)
- Università degli Studi del Piemonte Orientale “Amedeo Avogadro” (IT)
- Harvard University (US)
- University of Massachusetts Chan Medical School (US)
- University of Cagliari (IT)
- University of California, San Francisco (US)
- Cornell University (US)
- Istituto Neurologico Mediterraneo (IT)
- Massachusetts General Hospital (US)
- ASL Roma (IT)
- Neuroscience Institute (IT)
- Istituto per le Tecnologie Didattiche (IT)
- Institute for Experimental Endocrinology and Oncology (IT)
- Ospedale Policlinico San Martino (IT)
- Fondazione Santa Lucia (IT)
- Istituti di Ricovero e Cura a Carattere Scientifico (IT)
- Institute of Biomedical Technologies (IT)
- Ospedale San Luigi Gonzaga (IT)
- Piedmont University (US)
- Weill Cornell Medicine (US)
- Imperial College London (GB)
- University of Turin (IT)
- Massachusetts Institute of Technology (US)
- Sapienza University of Rome (IT)
Publication Details
- Journal
- Proceedings of the National Academy of Sciences
- Published
- 2025-04-04
- DOI
- https://doi.org/10.1073/pnas.2418783122
- Citations
- 14
- Primary Topic
- Multiple Sclerosis Research Studies
- Type
- article
- Field-Weighted Citation Impact
- 20.60
Funders
- National Multiple Sclerosis Society
- Sanofi
- Biogen
- Teva Pharmaceutical Industries
- Alexion Pharmaceuticals
- Celgene
- Fondazione Italiana Sclerosi Multipla
- Wellcome Trust
- GW Pharmaceuticals
- Mylan
- Multiple Sclerosis Society
- Ministero della Salute
- Sapienza Università di Roma
- Allergan
- Sanofi Genzyme