Colony pattern multistability emerges from a bistable switch

Microbial colony development hinges upon a myriad of factors, including mechanical, biochemical, and environmental niches, which collectively shape spatial patterns governed by intricate gene regulatory networks. The inherent complexity of this phenomenon necessitates innovative approaches to comprehend and compare the mechanisms driving pattern formation. Here, we unveil the multistability of bacterial colony patterns, where bacterial colony patterns can stabilize into multiple distinct types including ring-like patterns and sector-like patterns on hard agar, orchestrated by a simple synthetic bistable switch. Utilizing quantitative imaging and spatially resolved transcriptome approaches, we explore the deterministic process of a ring-like colony pattern formation from a single cell. This process is primarily driven by bifurcation events programmed by the gene regulatory network and microenvironmental cues. Additionally, we observe a noise-induced process amplified by the founder effect, leading to patterns of symmetry-break during range expansion. The degrees of asymmetry are profoundly influenced by the initial conditions of single progenitor cells during the nascent stages of colony development. These findings underscore how the process of range expansion enables individual cells, exposed to a uniform growth-promoting environment, to exhibit inherent capabilities in generating emergent, self-organized behavior.

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Journal
Proceedings of the National Academy of Sciences
Published
2025-04-04
DOI
https://doi.org/10.1073/pnas.2424112122
Primary Topic
Gene Regulatory Network Analysis
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article
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article

Colony pattern multistability emerges from a bistable switch

Xiongfei Fu, Pan Chu, Zhixin Ma, Jingwen Zhu
2 links
Proceedings of the National Academy of Sciences
Gene Regulatory Network Analysis
article

Colony pattern multistability emerges from a bistable switch

Xiongfei Fu, Pan Chu, Zhixin Ma, Jingwen Zhu
article en

Abstract

Microbial colony development hinges upon a myriad of factors, including mechanical, biochemical, and environmental niches, which collectively shape spatial patterns governed by intricate gene regulatory networks. The inherent complexity of this phenomenon necessitates innovative approaches to comprehend and compare the mechanisms driving pattern formation. Here, we unveil the multistability of bacterial colony patterns, where bacterial colony patterns can stabilize into multiple distinct types including ring-like patterns and sector-like patterns on hard agar, orchestrated by a simple synthetic bistable switch. Utilizing quantitative imaging and spatially resolved transcriptome approaches, we explore the deterministic process of a ring-like colony pattern formation from a single cell. This process is primarily driven by bifurcation events programmed by the gene regulatory network and microenvironmental cues. Additionally, we observe a noise-induced process amplified by the founder effect, leading to patterns of symmetry-break during range expansion. The degrees of asymmetry are profoundly influenced by the initial conditions of single progenitor cells during the nascent stages of colony development. These findings underscore how the process of range expansion enables individual cells, exposed to a uniform growth-promoting environment, to exhibit inherent capabilities in generating emergent, self-organized behavior.

Proceedings of the National Academy of SciencesVol. 122(14)
Shenzhen Institutes of Advanced Technology (CN), University of Chinese Academy of Sciences (CN)
Life in Land
Openalex Percentile: Top 94%
Gene Regulatory Network Analysis
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Colony pattern multistability emerges from a bistable switch — Xiongfei Fu, Pan Chu, et al. · Proceedings of the National Academy of Sciences (2025) | TGRS Research Map | TGRS