REPrise: de novo interspersed repeat detection using inexact seeding
REPrise can detect interspersed repeats with high sensitivity even in long genomes. Our software enhances repeat annotation in diverse genomic studies, contributing to a deeper understanding of genomic structures.
Authors
- Atsushi Takeda
- Michiaki Hamada (ORCID: https://orcid.org/0000-0001-9466-1034)
- Daisuke Nonaka (ORCID: https://orcid.org/0000-0001-6793-2062)
- Tsukasa Fukunaga (ORCID: https://orcid.org/0000-0003-4442-6049)
- Y. Imazu
Institutions
- Waseda University (JP)
- Tokyo University of Science (JP)
- The University of Tokyo (JP)
Publication Details
- Journal
- Mobile DNA
- Published
- 2025-04-03
- DOI
- https://doi.org/10.1186/s13100-025-00353-0
- Citations
- 1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- Japan Agency for Medical Research and Development
- Japan Society for the Promotion of Science
- Institute of Genetics