Landscape analysis of m6A modification regulators reveals LRPPRC as a key modulator in tubule cells for DKD: a multi-omics study

GSEA has revealed the potential m6a-associated pathways such as cGMP-PKG pathway. GSVA showed that the two types of m6a regulation, namely m6a-readers and m6a-writers, were generally suppressed in DKD patients. The output of 3 types of machine learning algorithm and differential analysis has determined the LRPPRC as the hub gene. LRPPRC was downregulated in the LOH, PODO, CT, and CD-ICB cell populations, most of which were tubular cells. It exhibited the decreasing trend over time, particularly pronounced in LOH cells. The low activity of LRPPRC was mainly detected in the injured renal tubules. In clinical patients, the expression levels of LRPPRC mRNA in DKD showed the tendency to be downregulated and exhibited the potential correlations with Glomerular Filtration Rate (GFR) and proteinuria according to the Nephroseq database. The lobeline might be an important potential compound involved in the regulation of LRPPRC and other m6a genes. Its actual efficacy needs to be verified <i>in vivo</i> or <i>in vitro</i>.

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Journal
Frontiers in Pharmacology
Published
2025-04-04
DOI
https://doi.org/10.3389/fphar.2025.1506896
Primary Topic
RNA modifications and cancer
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article
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article

Landscape analysis of m6A modification regulators reveals LRPPRC as a key modulator in tubule cells for DKD: a multi-omics study

Haijun Yu, Yudian Wang, Li Jiang, Jie Jian et al.
Frontiers in Pharmacology
RNA modifications and cancer
article

Landscape analysis of m6A modification regulators reveals LRPPRC as a key modulator in tubule cells for DKD: a multi-omics study

Haijun Yu, Yudian Wang, Li Jiang, Jie Jian, Xulin Sai, Xiai Wu, Yufei Zhang
article en

Abstract

GSEA has revealed the potential m6a-associated pathways such as cGMP-PKG pathway. GSVA showed that the two types of m6a regulation, namely m6a-readers and m6a-writers, were generally suppressed in DKD patients. The output of 3 types of machine learning algorithm and differential analysis has determined the LRPPRC as the hub gene. LRPPRC was downregulated in the LOH, PODO, CT, and CD-ICB cell populations, most of which were tubular cells. It exhibited the decreasing trend over time, particularly pronounced in LOH cells. The low activity of LRPPRC was mainly detected in the injured renal tubules. In clinical patients, the expression levels of LRPPRC mRNA in DKD showed the tendency to be downregulated and exhibited the potential correlations with Glomerular Filtration Rate (GFR) and proteinuria according to the Nephroseq database. The lobeline might be an important potential compound involved in the regulation of LRPPRC and other m6a genes. Its actual efficacy needs to be verified <i>in vivo</i> or <i>in vitro</i>.

Frontiers in PharmacologyVol. 16
Hubei University of Chinese Medicine (CN), China-Japan Friendship Hospital (CN), Integrated Chinese Medicine (China) (HK), Dongzhimen Hospital Affiliated to Beijing University of Chinese Medicine (CN), Beijing Aerospace General Hospital (CN)
Good health and well-being
Openalex Percentile: Top 94%
RNA modifications and cancer
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Landscape analysis of m6A modification regulators reveals LRPPRC as a key modulator in tubule cells for DKD: a multi-omics study — Haijun Yu, Yudian Wang, et al. · Frontiers in Pharmacology (2025) | TGRS Research Map | TGRS