VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
We present VCF2Dis, a straightforward and efficient tool for calculating genetic distance and constructing population phylogeny directly from large-scale genotype data. VCF2Dis has been widely applied, facilitating the exploration of population relationship in extensive genome sequencing studies.
Authors
- Jian Yang (ORCID: https://orcid.org/0000-0001-6318-8854)
- Shuaishuai Tai (ORCID: https://orcid.org/0000-0001-8204-6982)
- Menglong Qin
- Xiaodong Fang (ORCID: https://orcid.org/0000-0001-7061-3337)
- Xiaoli Huang (ORCID: https://orcid.org/0000-0002-2833-3523)
- Xun Liao (ORCID: https://orcid.org/0000-0002-6789-4358)
- Nana Jin
- Lian Xu (ORCID: https://orcid.org/0000-0003-1685-605X)
- Yi Jing (ORCID: https://orcid.org/0000-0002-5424-9106)
- Jianhua Shi (ORCID: https://orcid.org/0000-0002-5351-406X)
- Weiming He (ORCID: https://orcid.org/0000-0003-0483-5390)
Institutions
- Nantong University (CN)
- Botswana Geoscience Institute (BW)
- BGI Research (CN)
- Second Affiliated Hospital of Nantong University
Publication Details
- Journal
- GigaScience
- Published
- 2025-01-01
- DOI
- https://doi.org/10.1093/gigascience/giaf032
- Citations
- 29
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 23.37
Funders
- National Natural Science Foundation of China
- Government of Jiangsu Province
- Nantong University
- Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University