Chromosome-level genome assembly of the traditional medicinal plant Lindera aggregata

Lindera aggregata is a renowned medicinal plant in China, particularly the variety from Tiantai, Zhejiang Province, which is esteemed for its superior medicinal properties. Beyond its medicinal value, it holds significant economic potential and phylogenetic significance. Utilizing a range of sequencing techniques, we have successfully assembled and annotated a high-quality chromosome-level genome of L. aggregata. The assembled genome spans approximately 1.59 Gb, with a scaffold N50 length of 132.62 Mb. Approximately 93.07% of the assembled sequences have been anchored to 12 pseudo-chromosomes, and 70.02% of the genome consists of repetitive sequences. According to the annotations, a total of 33,283 genes are identified, of which 96.95% can predict function. This high-quality chromosome-level assembly and annotation will greatly assist in the development and utilization of L. aggregata's valuable resources, and also provide a crucial molecular foundation for investigating the evolutionary relationships within the Lauraceae family and the mechanisms behind the synthesis of active ingredients in L. aggregata.

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Publication Details

Journal
Scientific Data
Published
2025-04-03
DOI
https://doi.org/10.1038/s41597-025-04891-3
Citations
3
Primary Topic
Chromosomal and Genetic Variations
Type
article
Field-Weighted Citation Impact
5.25
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article

Chromosome-level genome assembly of the traditional medicinal plant Lindera aggregata

Qianfan Li, Yanquan Lin, Wei Zeng, Yujie Shi et al.
3 citations
Scientific Data
Chromosomal and Genetic Variations
5.25
article

Chromosome-level genome assembly of the traditional medicinal plant Lindera aggregata

Qianfan Li, Yanquan Lin, Wei Zeng, Yujie Shi, Zhen Chen, Junbo Ge, Jingyong Jiang, Weifu Yu
article en
3 citations

Abstract

Lindera aggregata is a renowned medicinal plant in China, particularly the variety from Tiantai, Zhejiang Province, which is esteemed for its superior medicinal properties. Beyond its medicinal value, it holds significant economic potential and phylogenetic significance. Utilizing a range of sequencing techniques, we have successfully assembled and annotated a high-quality chromosome-level genome of L. aggregata. The assembled genome spans approximately 1.59 Gb, with a scaffold N50 length of 132.62 Mb. Approximately 93.07% of the assembled sequences have been anchored to 12 pseudo-chromosomes, and 70.02% of the genome consists of repetitive sequences. According to the annotations, a total of 33,283 genes are identified, of which 96.95% can predict function. This high-quality chromosome-level assembly and annotation will greatly assist in the development and utilization of L. aggregata's valuable resources, and also provide a crucial molecular foundation for investigating the evolutionary relationships within the Lauraceae family and the mechanisms behind the synthesis of active ingredients in L. aggregata.

Scientific DataVol. 12(1)
Zhejiang A & F University (CN), Zhejiang Energy Group (China) (CN), Taizhou University (CN)
Zero hunger
Openalex Percentile: Top 6%
Chromosomal and Genetic Variations
5.25
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Chromosome-level genome assembly of the traditional medicinal plant Lindera aggregata — Qianfan Li, Yanquan Lin, et al. · Scientific Data (2025) | TGRS Research Map | TGRS