Using artificial intelligence tools to automate data extraction for living evidence syntheses

Living evidence synthesis (LES) involves repeatedly updating a systematic review or meta-analysis at regular intervals to incorporate new evidence into the summary results. It requires a considerable amount of human time investment in the article search, collection, and data extraction phases. Tools exist to automate the retrieval of relevant journal articles, but pulling data out of those articles is currently still a manual process. In this article, we present a proof-of-concept Python program that leverages artificial intelligence (AI) tools (specifically, ChatGPT) to parse a batch of journal articles and extract relevant results, greatly reducing the human time investment in this action without compromising on accuracy. Our program is tested on a set of journal articles that estimate the mean incubation period for COVID-19, an epidemiological parameter of importance for mathematical modelling. We also discuss important limitations related to the total amount of information and rate at which that information can be sent to the AI engine. This work contributes to the ongoing discussion about the use of AI and the role such tools can have in scientific research.

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Publication Details

Journal
PLoS ONE
Published
2025-04-03
DOI
https://doi.org/10.1371/journal.pone.0320151
Citations
7
Primary Topic
Explainable Artificial Intelligence (XAI)
Type
article
Field-Weighted Citation Impact
17.37

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article

Using artificial intelligence tools to automate data extraction for living evidence syntheses

Elisha B. Are, Evan Mitchell, David J. D. Earn, Caroline Colijn
7 citations
PLoS ONE
Explainable Artificial Intelligence (XAI)
17.37
article

Using artificial intelligence tools to automate data extraction for living evidence syntheses

Elisha B. Are, Evan Mitchell, David J. D. Earn, Caroline Colijn
article en
7 citations

Abstract

Living evidence synthesis (LES) involves repeatedly updating a systematic review or meta-analysis at regular intervals to incorporate new evidence into the summary results. It requires a considerable amount of human time investment in the article search, collection, and data extraction phases. Tools exist to automate the retrieval of relevant journal articles, but pulling data out of those articles is currently still a manual process. In this article, we present a proof-of-concept Python program that leverages artificial intelligence (AI) tools (specifically, ChatGPT) to parse a batch of journal articles and extract relevant results, greatly reducing the human time investment in this action without compromising on accuracy. Our program is tested on a set of journal articles that estimate the mean incubation period for COVID-19, an epidemiological parameter of importance for mathematical modelling. We also discuss important limitations related to the total amount of information and rate at which that information can be sent to the AI engine. This work contributes to the ongoing discussion about the use of AI and the role such tools can have in scientific research.

PLoS ONEVol. 20(4)
Simon Fraser University (CA), McMaster University (CA)
Canadian Institutes of Health Research
Openalex Percentile: Top 1%
Explainable Artificial Intelligence (XAI)
17.37
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Using artificial intelligence tools to automate data extraction for living evidence syntheses — Elisha B. Are, Evan Mitchell, et al. · PLoS ONE (2025) | TGRS Research Map | TGRS