Fundus Image Toolbox: A Python package for fundus image processing

The Fundus Image Toolbox is an open source Python suite of tools for working with retinal fundus images.It includes quality prediction, fovea and optic disc center localization, blood vessel segmentation, image registration, and fundus cropping functions.It also provides a collection of useful utilities for image manipulation and image-based PyTorch models.The toolbox is designed to be flexible and easy to use, thus helping to speed up research workflows.It is available as a PyPI package and at https://github.com/berenslab/fundus_image_toolbox. Statement of needIn ophthalmic research, retinal fundus images are often used as a resource for studying various eye diseases such as diabetic retinopathy, glaucoma and age-related macular degeneration.Consequently, there is a large amount of research on machine learning for fundus image analysis.However, many of the works do not publish their source code, and very few of them provide ready-to-use open source preprocessing tools to the community.

Authors

Institutions

Publication Details

Journal
The Journal of Open Source Software
Published
2025-04-03
DOI
https://doi.org/10.21105/joss.07101
Citations
1
Primary Topic
Retinal Imaging and Analysis
Type
article
Field-Weighted Citation Impact
1.36

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Fundus Image Toolbox: A Python package for fundus image processing

Philipp Berens, Ziwei Huang, Sarah Müller, Julius Gervelmeyer
1 citations
The Journal of Open Source Software
Retinal Imaging and Analysis
1.36
article

Fundus Image Toolbox: A Python package for fundus image processing

Philipp Berens, Ziwei Huang, Sarah Müller, Julius Gervelmeyer
article en
1 citations

Abstract

The Fundus Image Toolbox is an open source Python suite of tools for working with retinal fundus images.It includes quality prediction, fovea and optic disc center localization, blood vessel segmentation, image registration, and fundus cropping functions.It also provides a collection of useful utilities for image manipulation and image-based PyTorch models.The toolbox is designed to be flexible and easy to use, thus helping to speed up research workflows.It is available as a PyPI package and at https://github.com/berenslab/fundus_image_toolbox. Statement of needIn ophthalmic research, retinal fundus images are often used as a resource for studying various eye diseases such as diabetic retinopathy, glaucoma and age-related macular degeneration.Consequently, there is a large amount of research on machine learning for fundus image analysis.However, many of the works do not publish their source code, and very few of them provide ready-to-use open source preprocessing tools to the community.

The Journal of Open Source SoftwareVol. 10(108)
Hertie Institute for Clinical Brain Research (DE), University of Tübingen (DE)
International Max Planck Research School for Environmental, Cellular and Molecular Microbiology, International Max Planck Research School for Advanced Methods in Process and Systems Engineering
Decent work and economic growth
Openalex Percentile: Top 22%
Retinal Imaging and Analysis
1.36
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.