DALL-M: Context-aware clinical data augmentation with large language models

X-ray images are vital in medical diagnostics, but their effectiveness is limited without clinical context. Radiologists often find chest X-rays insufficient for diagnosing underlying diseases, necessitating the integration of structured clinical features with radiology reports. To address this, we introduce DALL-M, a novel framework that enhances clinical datasets by generating contextual synthetic data. DALL-M augments structured patient data, including vital signs (e.g., heart rate, oxygen saturation), radiology findings (e.g., lesion presence), and demographic factors. It integrates this tabular data with contextual knowledge extracted from radiology reports and domain-specific resources (e.g., Radiopaedia, Wikipedia), ensuring clinical consistency and reliability. DALL-M follows a three-phase process: (i) clinical context storage, (ii) expert query generation, and (iii) context-aware feature augmentation. Using large language models (LLMs), it generates both contextual synthetic values for existing clinical features and entirely new, clinically relevant features. Applied to 799 cases from the MIMIC-IV dataset, DALL-M expanded the original 9 clinical features to 91. Empirical validation with machine learning models - including Decision Trees, Random Forests, XGBoost, and TabNET - demonstrated a 16.5% improvement in F1 score and a 25% increase in Precision and Recall. DALL-M bridges an important gap in clinical data augmentation by preserving data integrity while enhancing predictive modeling in healthcare. Our results show that integrating LLM-generated synthetic features significantly improves model performance, making DALL-M a scalable and practical approach for AI-driven medical diagnostics.

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Publication Details

Journal
Computers in Biology and Medicine
Published
2025-04-03
DOI
https://doi.org/10.1016/j.compbiomed.2025.110022
Citations
10
Primary Topic
Machine Learning in Healthcare
Type
article
Field-Weighted Citation Impact
24.81

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article

DALL-M: Context-aware clinical data augmentation with large language models

Catarina Moreira, Chihcheng Hsieh, Margot Brereton, Joaquim Jorge et al.
10 citations
Computers in Biology and Medicine
Machine Learning in Healthcare
24.81
article

DALL-M: Context-aware clinical data augmentation with large language models

Catarina Moreira, Chihcheng Hsieh, Margot Brereton, Joaquim Jorge, Isabel Blanco Nobre, Sandra Costa Sousa, Chun Ouyang, Jacinto C. Nascimento
article en
10 citations

Abstract

X-ray images are vital in medical diagnostics, but their effectiveness is limited without clinical context. Radiologists often find chest X-rays insufficient for diagnosing underlying diseases, necessitating the integration of structured clinical features with radiology reports. To address this, we introduce DALL-M, a novel framework that enhances clinical datasets by generating contextual synthetic data. DALL-M augments structured patient data, including vital signs (e.g., heart rate, oxygen saturation), radiology findings (e.g., lesion presence), and demographic factors. It integrates this tabular data with contextual knowledge extracted from radiology reports and domain-specific resources (e.g., Radiopaedia, Wikipedia), ensuring clinical consistency and reliability. DALL-M follows a three-phase process: (i) clinical context storage, (ii) expert query generation, and (iii) context-aware feature augmentation. Using large language models (LLMs), it generates both contextual synthetic values for existing clinical features and entirely new, clinically relevant features. Applied to 799 cases from the MIMIC-IV dataset, DALL-M expanded the original 9 clinical features to 91. Empirical validation with machine learning models - including Decision Trees, Random Forests, XGBoost, and TabNET - demonstrated a 16.5% improvement in F1 score and a 25% increase in Precision and Recall. DALL-M bridges an important gap in clinical data augmentation by preserving data integrity while enhancing predictive modeling in healthcare. Our results show that integrating LLM-generated synthetic features significantly improves model performance, making DALL-M a scalable and practical approach for AI-driven medical diagnostics.

Computers in Biology and MedicineVol. 190
University of Technology Sydney (AU), Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento (PT), University of Lisbon (PT), Queensland University of Technology (AU), Universidade Politécnica de Lisboa (PT), Lusíada University of Lisbon (PT)
United Nations Educational, Scientific and Cultural Organization, Fundação para a Ciência e a Tecnologia
Openalex Percentile: Top 1%
Machine Learning in Healthcare
24.81
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