Data harmonization with StyleTransfer-GANs: enhancing non-invasive IDH classification in brain tumors
Isocitrate dehydrogenase (IDH) mutation status has emerged as an important prognostic marker in brain gliomas. Accurate non-invasive determination of IDH mutation status is crucial for effective therapy and prognosis. However, the variability in imaging protocols across institutions hinders the reliability of deep learning (DL) models used for IDH classification. To address data heterogeneity, a StyleTransfer-GAN ( <b><i>ST-net</i></b> ) was developed to harmonize multi-site MRI data. <b><i>ST-net</i></b> was applied to harmonize MR images from diverse databases while preserving critical imaging features. A high performing deep-learning network ( <b><i>MC-net</i></b> ) was used to assess the impact of style transfer on IDH classification. The results demonstrated that <b><i>ST-net</i></b> effectively aligned style features across datasets and minimized discrepancies caused by varied imaging protocols. The IDH classification accuracy improved post-harmonization, with enhancements in both sensitivity and specificity depending on the style transfer reference. Our study highlights the potential of data harmonization using GANs to improve the generalizability and clinical utility of DL models in neuro-oncology. It also provides a scalable solution adaptable to various neuroimaging tasks.
Authors
- Richard J. Bruce (ORCID: https://orcid.org/0000-0003-2004-8864)
- Kimmo J. Hatanpaa (ORCID: https://orcid.org/0000-0002-9910-9828)
- Rajan Jain (ORCID: https://orcid.org/0000-0002-4879-0457)
- James M. Holcomb (ORCID: https://orcid.org/0000-0001-5551-3936)
- Ananth J. Madhuranthakam (ORCID: https://orcid.org/0000-0002-5524-7962)
- Niloufar Saadat (ORCID: https://orcid.org/0000-0001-8152-599X)
- Marco C. Pinho (ORCID: https://orcid.org/0000-0002-4645-1638)
- Jason Bowerman
- Toral Patel (ORCID: https://orcid.org/0000-0002-8388-8206)
- Baowei Fei (ORCID: https://orcid.org/0000-0002-9123-9484)
- Joseph A. Maldjian (ORCID: https://orcid.org/0000-0002-6384-1072)
- Benjamin Wagner (ORCID: https://orcid.org/0000-0003-2835-986X)
- Matthew Lee
- Nghi Cong Dung Truong (ORCID: https://orcid.org/0000-0002-2195-3850)
- Divya Reddy
- Ganesh B Y Chandan (ORCID: https://orcid.org/0000-0001-8853-3036)
Institutions
- Southwestern Medical Center (US)
- Mayo Clinic in Arizona (US)
- Neurological Surgery (US)
- Southwestern Medical Center (US)
- New York University (US)
- The University of Texas Southwestern Medical Center (US)
Publication Details
- Published
- 2025-04-02
- DOI
- https://doi.org/10.1117/12.3049148
- Primary Topic
- Radiomics and Machine Learning in Medical Imaging
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Institutes of Health
- National Cancer Institute