Investigation of the Pathogenesis of Liver Fibrosis Associated with Type 2 Diabetes Mellitus via Bioinformatic Analysis

<b>Background:</b> The global prevalence of type 2 diabetes mellitus (T2DM) with liver fibrosis is rising, with T2DM identified as an independent risk factor and key prognostic factor for liver fibrosis. However, the underlying mechanisms remain unclear. <b>Methods:</b> To explore the shared pathogenesis of liver fibrosis and T2DM, we analyzed gene expression profiles from the GEO database. The co-differentially expressed genes (co-DEGs) were identified and subsequently analyzed through functional enrichment, protein-protein interaction (PPI) network construction, transcription factor prediction, and drug prediction. Machine learning algorithms were then applied to identify key genes. <b>Results:</b> A total of 175 co-DEGs were identified. Functional enrichment analysis indicated their involvement in extracellular matrix (ECM) remodeling, inflammation, and the PI3K/Akt signaling pathway. Through PPI network analysis and four algorithms, eight hub genes were identified, including <i>SPARC</i>, <i>COL4A2</i>, <i>THBS1</i>, <i>LUM</i>, <i>TIMP3</i>, <i>COL3A1</i>, <i>IGFBP7</i>, and <i>FSTL1</i>, with <i>THBS1</i> being recognized as a key gene by machine learning. The upregulation of <i>THBS1</i> was observed in both diseases, and it is closely related to the progression of liver fibrosis and T2DM. Transcription factor analysis detected 29 regulators of these hub genes. Drug prediction analysis suggested that retinoic acid may serve as a potential therapeutic agent. <b>Conclusions</b>: This study provides novel insights into the shared pathogenesis of liver fibrosis and T2DM and offer potential targets for clinical intervention.

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Publication Details

Journal
Biomedicines
Published
2025-04-01
DOI
https://doi.org/10.3390/biomedicines13040840
Citations
1
Primary Topic
Liver Disease Diagnosis and Treatment
Type
article
Field-Weighted Citation Impact
1.35

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article

Investigation of the Pathogenesis of Liver Fibrosis Associated with Type 2 Diabetes Mellitus via Bioinformatic Analysis

Yingan Jiang, Zhiyu Xiong, Kan Shu
1 citations
Biomedicines
Liver Disease Diagnosis and Treatment
1.35
article

Investigation of the Pathogenesis of Liver Fibrosis Associated with Type 2 Diabetes Mellitus via Bioinformatic Analysis

Yingan Jiang, Zhiyu Xiong, Kan Shu
article en
1 citations

Abstract

<b>Background:</b> The global prevalence of type 2 diabetes mellitus (T2DM) with liver fibrosis is rising, with T2DM identified as an independent risk factor and key prognostic factor for liver fibrosis. However, the underlying mechanisms remain unclear. <b>Methods:</b> To explore the shared pathogenesis of liver fibrosis and T2DM, we analyzed gene expression profiles from the GEO database. The co-differentially expressed genes (co-DEGs) were identified and subsequently analyzed through functional enrichment, protein-protein interaction (PPI) network construction, transcription factor prediction, and drug prediction. Machine learning algorithms were then applied to identify key genes. <b>Results:</b> A total of 175 co-DEGs were identified. Functional enrichment analysis indicated their involvement in extracellular matrix (ECM) remodeling, inflammation, and the PI3K/Akt signaling pathway. Through PPI network analysis and four algorithms, eight hub genes were identified, including <i>SPARC</i>, <i>COL4A2</i>, <i>THBS1</i>, <i>LUM</i>, <i>TIMP3</i>, <i>COL3A1</i>, <i>IGFBP7</i>, and <i>FSTL1</i>, with <i>THBS1</i> being recognized as a key gene by machine learning. The upregulation of <i>THBS1</i> was observed in both diseases, and it is closely related to the progression of liver fibrosis and T2DM. Transcription factor analysis detected 29 regulators of these hub genes. Drug prediction analysis suggested that retinoic acid may serve as a potential therapeutic agent. <b>Conclusions</b>: This study provides novel insights into the shared pathogenesis of liver fibrosis and T2DM and offer potential targets for clinical intervention.

BiomedicinesVol. 13(4)
Wuhan University (CN), Renmin Hospital of Wuhan University (CN)
Renmin Hospital of Wuhan University
Good health and well-being
Openalex Percentile: Top 21%
Liver Disease Diagnosis and Treatment
1.35
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