Sustainable regeneration of 20 aminoacyl-tRNA synthetases in a reconstituted system toward self-synthesizing artificial systems

In vitro construction of self-reproducible artificial systems is a major challenge in bottom-up synthetic biology. Here, we developed a reconstituted system capable of sustainably regenerating all 20 aminoacyl-transfer RNA synthetases (AARS), which are major components of the translation system. To achieve this, we needed five types of improvements: (i) optimization of AARS sequences for efficient translation, (ii) optimization of the composition of the translation system to enhance translation, (iii) employment of another bacterial AlaRS and SerRS to improve each aminoacylation activity, (iv) diminishing the translational inhibition caused by certain AARS sequences by codon optimization and EF-P addition, and (v) balancing the DNA concentrations of 20 AARS to match each requirement. After these improvements, we succeeded in the sustainable regeneration of all 20 AARS for up to 20 cycles of 2.5-fold serial dilutions. These methodologies and results provide a substantial advancement toward the realization of self-reproducible artificial systems.

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Publication Details

Journal
Science Advances
Published
2025-04-02
DOI
https://doi.org/10.1126/sciadv.adt6269
Citations
14
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
11.28
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article

Sustainable regeneration of 20 aminoacyl-tRNA synthetases in a reconstituted system toward self-synthesizing artificial systems

Yoshihiro Shimizu, Katsumi Hagino, Norikazu Ichihashi, Keiko Masuda
14 citations
Science Advances
RNA and protein synthesis mechanisms
11.28
article

Sustainable regeneration of 20 aminoacyl-tRNA synthetases in a reconstituted system toward self-synthesizing artificial systems

Yoshihiro Shimizu, Katsumi Hagino, Norikazu Ichihashi, Keiko Masuda
article en
14 citations

Abstract

In vitro construction of self-reproducible artificial systems is a major challenge in bottom-up synthetic biology. Here, we developed a reconstituted system capable of sustainably regenerating all 20 aminoacyl-transfer RNA synthetases (AARS), which are major components of the translation system. To achieve this, we needed five types of improvements: (i) optimization of AARS sequences for efficient translation, (ii) optimization of the composition of the translation system to enhance translation, (iii) employment of another bacterial AlaRS and SerRS to improve each aminoacylation activity, (iv) diminishing the translational inhibition caused by certain AARS sequences by codon optimization and EF-P addition, and (v) balancing the DNA concentrations of 20 AARS to match each requirement. After these improvements, we succeeded in the sustainable regeneration of all 20 AARS for up to 20 cycles of 2.5-fold serial dilutions. These methodologies and results provide a substantial advancement toward the realization of self-reproducible artificial systems.

Science AdvancesVol. 11(14)
Tokyo University of the Arts (JP), RIKEN Center for Biosystems Dynamics Research (JP), The University of Tokyo (JP)
Responsible consumption and production
Openalex Percentile: Top 1%
RNA and protein synthesis mechanisms
11.28
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Sustainable regeneration of 20 aminoacyl-tRNA synthetases in a reconstituted system toward self-synthesizing artificial systems — Yoshihiro Shimizu, Katsumi Hagino, et al. · Science Advances (2025) | TGRS Research Map | TGRS