Chromosome-level genome assembly of the Adonis ladybird Hippodamia variegata
The Adonis ladybird (Hippodamia variegata), an important predator in agricultural ecosystems, plays a crucial role in biological control and is a significant model for evolutionary and genomic studies within Coccinellidae. Despite its ecological importance, the lack of a reference genome for H. variegata has limited in-depth investigations into its biology and potential as a biocontrol agent. Here, we present a high-quality, chromosome-level genome assembly of H. variegata. The final assembly spans 493.01 Mb, with a scaffold N50 of 28.19 Mb and a GC content of 36.41%. Hi-C sequencing data enabled the anchoring of 343.20 Mb to 10 chromosomes. Repetitive elements accounted for 258.56 Mb (52.44%) of the genome, with long interspersed nuclear elements (LINEs) being the most prevalent. We identified 37,348 protein-coding genes, of which 78.55% were functionally annotated in public protein databases. This high-quality genome assembly will serve as a valuable resource for furthering our understanding of Adonis ladybird's evolutionary biology, enhancing its utility in pest management, and supporting future research on ladybird genomics.
Authors
- Hong-Ling Liu
- Zhi-Teng Chen (ORCID: https://orcid.org/0000-0002-6331-8978)
- Shu‐Jun Wei (ORCID: https://orcid.org/0000-0001-7398-0968)
- Peng Cai (ORCID: https://orcid.org/0000-0001-9618-3427)
- De-Qiang Pu (ORCID: https://orcid.org/0000-0002-4519-6874)
- Yang Yong
- Xing-Long Wu
Institutions
- Jiangsu University of Science and Technology (CN)
- Institute of Plant Protection (CN)
- Beijing Academy of Agricultural and Forestry Sciences (CN)
- Sichuan Academy of Agricultural Sciences (CN)
Publication Details
- Journal
- Scientific Data
- Published
- 2025-04-01
- DOI
- https://doi.org/10.1038/s41597-025-04882-4
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00