Chromosome-level genome assembly of the Adonis ladybird Hippodamia variegata

The Adonis ladybird (Hippodamia variegata), an important predator in agricultural ecosystems, plays a crucial role in biological control and is a significant model for evolutionary and genomic studies within Coccinellidae. Despite its ecological importance, the lack of a reference genome for H. variegata has limited in-depth investigations into its biology and potential as a biocontrol agent. Here, we present a high-quality, chromosome-level genome assembly of H. variegata. The final assembly spans 493.01 Mb, with a scaffold N50 of 28.19 Mb and a GC content of 36.41%. Hi-C sequencing data enabled the anchoring of 343.20 Mb to 10 chromosomes. Repetitive elements accounted for 258.56 Mb (52.44%) of the genome, with long interspersed nuclear elements (LINEs) being the most prevalent. We identified 37,348 protein-coding genes, of which 78.55% were functionally annotated in public protein databases. This high-quality genome assembly will serve as a valuable resource for furthering our understanding of Adonis ladybird's evolutionary biology, enhancing its utility in pest management, and supporting future research on ladybird genomics.

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Publication Details

Journal
Scientific Data
Published
2025-04-01
DOI
https://doi.org/10.1038/s41597-025-04882-4
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

Chromosome-level genome assembly of the Adonis ladybird Hippodamia variegata

Hong-Ling Liu, Zhi-Teng Chen, Shu‐Jun Wei, Peng Cai et al.
Scientific Data
Genomics and Phylogenetic Studies
article

Chromosome-level genome assembly of the Adonis ladybird Hippodamia variegata

Hong-Ling Liu, Zhi-Teng Chen, Shu‐Jun Wei, Peng Cai, De-Qiang Pu, Yang Yong, Xing-Long Wu
article en

Abstract

The Adonis ladybird (Hippodamia variegata), an important predator in agricultural ecosystems, plays a crucial role in biological control and is a significant model for evolutionary and genomic studies within Coccinellidae. Despite its ecological importance, the lack of a reference genome for H. variegata has limited in-depth investigations into its biology and potential as a biocontrol agent. Here, we present a high-quality, chromosome-level genome assembly of H. variegata. The final assembly spans 493.01 Mb, with a scaffold N50 of 28.19 Mb and a GC content of 36.41%. Hi-C sequencing data enabled the anchoring of 343.20 Mb to 10 chromosomes. Repetitive elements accounted for 258.56 Mb (52.44%) of the genome, with long interspersed nuclear elements (LINEs) being the most prevalent. We identified 37,348 protein-coding genes, of which 78.55% were functionally annotated in public protein databases. This high-quality genome assembly will serve as a valuable resource for furthering our understanding of Adonis ladybird's evolutionary biology, enhancing its utility in pest management, and supporting future research on ladybird genomics.

Scientific DataVol. 12(1)
Jiangsu University of Science and Technology (CN), Institute of Plant Protection (CN), Beijing Academy of Agricultural and Forestry Sciences (CN), Sichuan Academy of Agricultural Sciences (CN)
Zero hunger
Openalex Percentile: Top 94%
Genomics and Phylogenetic Studies
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