Inspired by molecular dynamic simulation, exploring chemical constituents of alcoholic extract of <i>Garuga pinnata</i> computationally as inhibitors of GluN2B-containing NMDA receptors

<i>Garuga pinnata</i> a tree spotted in the Asian continent constitutes of constellation of phytochemicals in the whole tree from which the alcoholic extract of the leaf is the abundant source. The phytochemicals namely Amentoflavone, Garuganin-1, Garuganin-3, Garuganin-4, and Garuganin-5 were considered for the study as they have the anti-Alzheimer's potential but the biological target has not been reported. So, to identify the target the phytochemicals were scrutinized by employing <i>in silico</i> methodologies namely molecular docking, molecular dynamics simulation, and ADMET prediction. Molecular docking revealed that Amentoflavone occupied the active site of the NMDA, and established interactions with Gln110, Glu236, Ile133, and Asp136 with an excellent docking score of -8.535 kcal/mol. Amentoflavone with the best docking score was selected for molecular dynamics which revealed that Amentoflavone maintained stability in the active site of the NMDA receptor with three hydrogen bond interactions in 100 ns time scale of the trajectory. Amentoflavone demonstrated an encouraging ADMET profile as compared to other phytochemicals. In the nut shell Amentoflavone displayed excellent <i>in silico</i> results and further may demonstrate an excellent <i>in vitro</i> NMDA inhibitory potential.

Authors

Institutions

Publication Details

Journal
Journal of Biomolecular Structure and Dynamics
Published
2025-04-01
DOI
https://doi.org/10.1080/07391102.2025.2477776
Primary Topic
Phytochemistry and Biological Activities
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Inspired by molecular dynamic simulation, exploring chemical constituents of alcoholic extract of Garuga pinnata computationally as inhibitors of GluN2B-containing NMDA receptors

Chandrakant Bagul, Dileep Kumar, Ravindra Kulkarni, Vinayak Walhekar et al.
Journal of Biomolecular Structure and Dynamics
Phytochemistry and Biological Activities
article

Inspired by molecular dynamic simulation, exploring chemical constituents of alcoholic extract of Garuga pinnata computationally as inhibitors of GluN2B-containing NMDA receptors

Chandrakant Bagul, Dileep Kumar, Ravindra Kulkarni, Vinayak Walhekar, Amol Muthal, Mahesh Palled, Vaibhav Shinde, V. Chandrashekar, Jagannath Shinge, Baswaraj Macha
article en

Abstract

<i>Garuga pinnata</i> a tree spotted in the Asian continent constitutes of constellation of phytochemicals in the whole tree from which the alcoholic extract of the leaf is the abundant source. The phytochemicals namely Amentoflavone, Garuganin-1, Garuganin-3, Garuganin-4, and Garuganin-5 were considered for the study as they have the anti-Alzheimer's potential but the biological target has not been reported. So, to identify the target the phytochemicals were scrutinized by employing <i>in silico</i> methodologies namely molecular docking, molecular dynamics simulation, and ADMET prediction. Molecular docking revealed that Amentoflavone occupied the active site of the NMDA, and established interactions with Gln110, Glu236, Ile133, and Asp136 with an excellent docking score of -8.535 kcal/mol. Amentoflavone with the best docking score was selected for molecular dynamics which revealed that Amentoflavone maintained stability in the active site of the NMDA receptor with three hydrogen bond interactions in 100 ns time scale of the trajectory. Amentoflavone demonstrated an encouraging ADMET profile as compared to other phytochemicals. In the nut shell Amentoflavone displayed excellent <i>in silico</i> results and further may demonstrate an excellent <i>in vitro</i> NMDA inhibitory potential.

Journal of Biomolecular Structure and DynamicsVol. 44(3)
S Nijalingappa Medical College and HSK Hospital & Research Centre (IN), KLE Academy of Higher Education and Research (IN), Education and Research Institute (US), Pharmac (NZ), University of California, Davis (US), Savitribai Phule Pune University (IN)
Zero hunger
Openalex Percentile: Top 96%
Phytochemistry and Biological Activities
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.