Comprehensive Genomic Dataset of Chinese Lizardtail Herb and Comparative Genomic Analysis Provide Insights Into Its Paleo‐Polyploidization Event

The Chinese lizardtail herb, <i>Saururus chinensis</i>, holds a prominent position in traditional Chinese medicine. In this study, we present a comprehensive genomic dataset for <i>S. chinensis</i>. Furthermore, comparative genomic analysis indicates that the extant genome of <i>S. chinensis</i> retains extensive traces of a paleo-tetraploidization event. These traces are observable at both the macroscopic level of chromosomes and the microscopic level within specific gene families, such as the <i>PEL</i> (pseudo-etiolation in light) gene family. Additionally, our findings further suggest that this paleo-tetraploidization event drives an expansion of the <i>PEL</i> gene family in the <i>S. chinensis</i> genome, potentially facilitating its neo- and sub-functionalization, and thereby contributing to the evolutionary adaptability of this species.

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Publication Details

Journal
Ecology and Evolution
Published
2025-03-30
DOI
https://doi.org/10.1002/ece3.70425
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Comprehensive Genomic Dataset of Chinese Lizardtail Herb and Comparative Genomic Analysis Provide Insights Into Its Paleo‐Polyploidization Event

Shunhui Cai, Cheng‐Yi Tang
Ecology and Evolution
Genomics and Phylogenetic Studies
article

Comprehensive Genomic Dataset of Chinese Lizardtail Herb and Comparative Genomic Analysis Provide Insights Into Its Paleo‐Polyploidization Event

Shunhui Cai, Cheng‐Yi Tang
article en

Abstract

The Chinese lizardtail herb, <i>Saururus chinensis</i>, holds a prominent position in traditional Chinese medicine. In this study, we present a comprehensive genomic dataset for <i>S. chinensis</i>. Furthermore, comparative genomic analysis indicates that the extant genome of <i>S. chinensis</i> retains extensive traces of a paleo-tetraploidization event. These traces are observable at both the macroscopic level of chromosomes and the microscopic level within specific gene families, such as the <i>PEL</i> (pseudo-etiolation in light) gene family. Additionally, our findings further suggest that this paleo-tetraploidization event drives an expansion of the <i>PEL</i> gene family in the <i>S. chinensis</i> genome, potentially facilitating its neo- and sub-functionalization, and thereby contributing to the evolutionary adaptability of this species.

Ecology and EvolutionVol. 15(4)
Jiangsu University (CN), Yixing People's Hospital (CN), Nanjing University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Jiangsu Province
Life in Land
Openalex Percentile: Top 94%
Genomics and Phylogenetic Studies
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