Novel N-6-X-3-pyridinoyl-N'-4-chlorophenylthioureas (X = Cl, Me): Synthesis, characterization, computational analysis and in silico biological activity studies
• We report new thiourea derivatives N -6-X-3-pyridinoyl- N' −4-chlorophenylthiourea ( X = Cl, 1 ; Me, 2 ). • 1 and 2 were characterized by the means of elemental analysis data, IR and 1 H NMR spectroscopy. • The formation of two conformers were revealed for 2 in DMSO . • 1 and 2 were studied using the DFT/B3LYP/6–311++G(d,p)-based calculations. • Molecular docking revealed positive activity of 1 and 2 toward hemoglobin S. In this work, to develop novel agents capable of inhibiting hemoglobin S (HbS), which is the primary cause of sickle cell anemia (SCA), we synthesized two new phenyl-pyridinoyl-thiourea derivatives namely N -6‑chloro-3-pyridinoyl- N' -4-chlorophenylthiourea ( 1 ) and N -6-methyl-3-pyridinoyl- N' -4-chlorophenylthiourea ( 2 ). Compounds 1 and 2 were obtained through a one-pot reaction of 6-chloronicotinoyl chloride with an equimolar amount of KSCN followed by the addition of an equimolar amount of 4-chloroaniline or 4-aminotoluene, respectively, in the medium of acetone. The formation of both compounds was proved by the means of elemental analysis data, IR and 1 H NMR spectroscopy. Notably, the 1 H NMR spectrum of 2 recorded in DMSO‑ d 6 revealed two sets of signals corresponding to two isomers, while the same spectrum of 1 exhibited only one set of signals. Both isomeric forms of 1 and 2 were studied using the DFT-based calculations, which allowed to conclude that the formation of two isomeric forms of 2 is energetically more favorable in the DMSO medium in comparison to 1 . The biological activities of the discussed compounds were analyzed in silico to reveal their potential ADMET properties. It was predicted that both 1 and 2 belong to the fifth class of toxicity and are hepato-, neuro-, eco- and nutritionally toxic, while they are inactive in nephro-, cardio-, immuno-, cyto-, respiratory and clinical toxicity, and in carcinogenicity and mutagenicity. As evidenced from the molecular docking simulations, both 1 and 2 exhibit a potential activity to inhibit HbS, with the corresponding ligand efficiency scores being well within the range for a Hit.
Authors
- Damir A. Safin (ORCID: https://orcid.org/0000-0002-9080-7072)
- Karzan Mahmood Ahmed (ORCID: https://orcid.org/0000-0001-9338-6341)
- Yousif Hussein Azeez (ORCID: https://orcid.org/0000-0001-5357-7856)
- Elizaveta V. Panova (ORCID: https://orcid.org/0009-0002-0379-2296)
- Rebaz Obaıd Kareem (ORCID: https://orcid.org/0000-0001-6273-1309)
- Rahman Azeez Muhammed
- Rzgar Faruq Rashid
- Rebaz Anwar Omar
Institutions
- Ural Federal University (RU)
- Hawler Medical University (IQ)
- Kurdistan Regional Government (IQ)
- University of Tyumen (RU)
- Western Caspian University (AZ)
- University of Halabja (IQ)
- Koya University (IQ)
Publication Details
- Journal
- Journal of Molecular Structure
- Published
- 2025-03-31
- DOI
- https://doi.org/10.1016/j.molstruc.2025.142235
- Citations
- 7
- Primary Topic
- Synthesis and biological activity
- Type
- article
- Field-Weighted Citation Impact
- 6.55