Novel N-6-X-3-pyridinoyl-N'-4-chlorophenylthioureas (X = Cl, Me): Synthesis, characterization, computational analysis and in silico biological activity studies

• We report new thiourea derivatives N -6-X-3-pyridinoyl- N' −4-chlorophenylthiourea ( X = Cl, 1 ; Me, 2 ). • 1 and 2 were characterized by the means of elemental analysis data, IR and 1 H NMR spectroscopy. • The formation of two conformers were revealed for 2 in DMSO . • 1 and 2 were studied using the DFT/B3LYP/6–311++G(d,p)-based calculations. • Molecular docking revealed positive activity of 1 and 2 toward hemoglobin S. In this work, to develop novel agents capable of inhibiting hemoglobin S (HbS), which is the primary cause of sickle cell anemia (SCA), we synthesized two new phenyl-pyridinoyl-thiourea derivatives namely N -6‑chloro-3-pyridinoyl- N' -4-chlorophenylthiourea ( 1 ) and N -6-methyl-3-pyridinoyl- N' -4-chlorophenylthiourea ( 2 ). Compounds 1 and 2 were obtained through a one-pot reaction of 6-chloronicotinoyl chloride with an equimolar amount of KSCN followed by the addition of an equimolar amount of 4-chloroaniline or 4-aminotoluene, respectively, in the medium of acetone. The formation of both compounds was proved by the means of elemental analysis data, IR and 1 H NMR spectroscopy. Notably, the 1 H NMR spectrum of 2 recorded in DMSO‑ d 6 revealed two sets of signals corresponding to two isomers, while the same spectrum of 1 exhibited only one set of signals. Both isomeric forms of 1 and 2 were studied using the DFT-based calculations, which allowed to conclude that the formation of two isomeric forms of 2 is energetically more favorable in the DMSO medium in comparison to 1 . The biological activities of the discussed compounds were analyzed in silico to reveal their potential ADMET properties. It was predicted that both 1 and 2 belong to the fifth class of toxicity and are hepato-, neuro-, eco- and nutritionally toxic, while they are inactive in nephro-, cardio-, immuno-, cyto-, respiratory and clinical toxicity, and in carcinogenicity and mutagenicity. As evidenced from the molecular docking simulations, both 1 and 2 exhibit a potential activity to inhibit HbS, with the corresponding ligand efficiency scores being well within the range for a Hit.

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Publication Details

Journal
Journal of Molecular Structure
Published
2025-03-31
DOI
https://doi.org/10.1016/j.molstruc.2025.142235
Citations
7
Primary Topic
Synthesis and biological activity
Type
article
Field-Weighted Citation Impact
6.55
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article

Novel N-6-X-3-pyridinoyl-N'-4-chlorophenylthioureas (X = Cl, Me): Synthesis, characterization, computational analysis and in silico biological activity studies

Damir A. Safin, Karzan Mahmood Ahmed, Yousif Hussein Azeez, Elizaveta V. Panova et al.
7 citations
Journal of Molecular Structure
Synthesis and biological activity
6.55
article

Novel N-6-X-3-pyridinoyl-N'-4-chlorophenylthioureas (X = Cl, Me): Synthesis, characterization, computational analysis and in silico biological activity studies

Damir A. Safin, Karzan Mahmood Ahmed, Yousif Hussein Azeez, Elizaveta V. Panova, Rebaz Obaıd Kareem, Rahman Azeez Muhammed, Rzgar Faruq Rashid, Rebaz Anwar Omar
article en
7 citations

Abstract

• We report new thiourea derivatives N -6-X-3-pyridinoyl- N' −4-chlorophenylthiourea ( X = Cl, 1 ; Me, 2 ). • 1 and 2 were characterized by the means of elemental analysis data, IR and 1 H NMR spectroscopy. • The formation of two conformers were revealed for 2 in DMSO . • 1 and 2 were studied using the DFT/B3LYP/6–311++G(d,p)-based calculations. • Molecular docking revealed positive activity of 1 and 2 toward hemoglobin S. In this work, to develop novel agents capable of inhibiting hemoglobin S (HbS), which is the primary cause of sickle cell anemia (SCA), we synthesized two new phenyl-pyridinoyl-thiourea derivatives namely N -6‑chloro-3-pyridinoyl- N' -4-chlorophenylthiourea ( 1 ) and N -6-methyl-3-pyridinoyl- N' -4-chlorophenylthiourea ( 2 ). Compounds 1 and 2 were obtained through a one-pot reaction of 6-chloronicotinoyl chloride with an equimolar amount of KSCN followed by the addition of an equimolar amount of 4-chloroaniline or 4-aminotoluene, respectively, in the medium of acetone. The formation of both compounds was proved by the means of elemental analysis data, IR and 1 H NMR spectroscopy. Notably, the 1 H NMR spectrum of 2 recorded in DMSO‑ d 6 revealed two sets of signals corresponding to two isomers, while the same spectrum of 1 exhibited only one set of signals. Both isomeric forms of 1 and 2 were studied using the DFT-based calculations, which allowed to conclude that the formation of two isomeric forms of 2 is energetically more favorable in the DMSO medium in comparison to 1 . The biological activities of the discussed compounds were analyzed in silico to reveal their potential ADMET properties. It was predicted that both 1 and 2 belong to the fifth class of toxicity and are hepato-, neuro-, eco- and nutritionally toxic, while they are inactive in nephro-, cardio-, immuno-, cyto-, respiratory and clinical toxicity, and in carcinogenicity and mutagenicity. As evidenced from the molecular docking simulations, both 1 and 2 exhibit a potential activity to inhibit HbS, with the corresponding ligand efficiency scores being well within the range for a Hit.

Journal of Molecular StructureVol. 1338
Ural Federal University (RU), Hawler Medical University (IQ), Kurdistan Regional Government (IQ), University of Tyumen (RU), Western Caspian University (AZ), University of Halabja (IQ), Koya University (IQ)
Openalex Percentile: Top 3%
Synthesis and biological activity
6.55
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