Recovery of 679 metagenome-assembled genomes from different soil depths along a precipitation gradient

Soil contains a diverse community of organisms; these can include archaea, fungi, viruses, and bacteria. In situ identification of soil microorganisms is challenging. The use of genome-centric metagenomics enables the assembly and identification of microbial populations, allowing the categorization and exploration of potential functions living in the complex soil environment. However, the heterogeneity of the soil-inhabiting microbes poses a tremendous challenge, with their functions left unknown, and difficult to culture in lab settings. In this study, using genome assembling strategies from both field core samples and enriched monolith samples, we assembled 679 highly complete metagenome-assembled genomes (MAGs). The ability to identify these MAGs from samples across a precipitation gradient in the state of Kansas (USA) provided insights into the impact of precipitation levels on soil microbial populations. Metabolite modeling of the MAGs revealed that more than 80% of the microbial populations possessed carbohydrate-active enzymes, capable of breaking down chitin and starch.

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Publication Details

Journal
Scientific Data
Published
2025-03-28
DOI
https://doi.org/10.1038/s41597-025-04884-2
Citations
5
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
8.58
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article

Recovery of 679 metagenome-assembled genomes from different soil depths along a precipitation gradient

Sonny T. M. Lee, Hallie Wiechman, Soumyadev Sarkar, Tanner Richie et al.
5 citations
Scientific Data
Microbial Community Ecology and Physiology
8.58
article

Recovery of 679 metagenome-assembled genomes from different soil depths along a precipitation gradient

Sonny T. M. Lee, Hallie Wiechman, Soumyadev Sarkar, Tanner Richie, Anna Kazarina
article en
5 citations

Abstract

Soil contains a diverse community of organisms; these can include archaea, fungi, viruses, and bacteria. In situ identification of soil microorganisms is challenging. The use of genome-centric metagenomics enables the assembly and identification of microbial populations, allowing the categorization and exploration of potential functions living in the complex soil environment. However, the heterogeneity of the soil-inhabiting microbes poses a tremendous challenge, with their functions left unknown, and difficult to culture in lab settings. In this study, using genome assembling strategies from both field core samples and enriched monolith samples, we assembled 679 highly complete metagenome-assembled genomes (MAGs). The ability to identify these MAGs from samples across a precipitation gradient in the state of Kansas (USA) provided insights into the impact of precipitation levels on soil microbial populations. Metabolite modeling of the MAGs revealed that more than 80% of the microbial populations possessed carbohydrate-active enzymes, capable of breaking down chitin and starch.

Scientific DataVol. 12(1)
Kansas State University (US), Arizona State University (US)
Openalex Percentile: Top 3%
Microbial Community Ecology and Physiology
8.58
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Recovery of 679 metagenome-assembled genomes from different soil depths along a precipitation gradient — Sonny T. M. Lee, Hallie Wiechman, et al. · Scientific Data (2025) | TGRS Research Map | TGRS