Real-World Performance of the EasyPGX® Ready Epidermal Growth Factor Receptor Assay for Genomic Testing of Non-Small Cell Lung Cancer Samples

<b>Background/Objectives</b>: Activating epidermal growth factor receptor (<i>EGFR</i>) variants is the most common targetable alteration in non-small cell lung cancer (NSCLC). Clinical decision-making requires fast and reliable detection of <i>EGFR</i> variants in early and advanced NSCLC, but limited available tissue necessitates tissue-sparing approaches and optimized sample management. The objective of this study was to assess the performance of the commercial EasyPGX<sup>®</sup> ready EGFR assay using real-world clinical NSCLC samples. <b>Methods</b>: A consecutive cohort of 804 non-squamous NSCLC samples was prospectively analyzed with the real-time quantitative polymerase chain reaction (RT-qPCR)-based EasyPGX<sup>®</sup> ready EGFR assay (Diatech Pharmacogenetics, Jesi, Ancona, Italy) and compared to next-generation sequencing (NGS) assays. <b>Results</b>: NGS revealed conclusive results in 99.7% samples, of which 11.1% had at least one <i>EGFR</i> variant. The most common variants were exon 19 deletions and p.L858R. The RT-qPCR-based assay identified <i>EGFR</i> variants with high accuracy (overall concordance rate 94.3%) over a broad range of clinical sample types, variant allele frequencies, tumor cell contents and deoxyribonucleic acid (DNA) input amounts. <b>Conclusions</b>: This study demonstrates that the EasyPGX<sup>®</sup> ready EGFR assay is a valid approach for the rapid detection of common <i>EGFR</i> variants in real-world clinical NSCLC samples with DNA inputs as low as 5 ng (less than the 15 ng recommended by the manufacturer), improving sample management in small specimens with limited quantity of nucleic acids.

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Publication Details

Journal
Biomedicines
Published
2025-03-28
DOI
https://doi.org/10.3390/biomedicines13040814
Primary Topic
Lung Cancer Treatments and Mutations
Type
article
Field-Weighted Citation Impact
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article

Real-World Performance of the EasyPGX® Ready Epidermal Growth Factor Receptor Assay for Genomic Testing of Non-Small Cell Lung Cancer Samples

Wolfram Jochum, Sandra Floriani, Izadora Demmer, Michael B. Schmid et al.
Biomedicines
Lung Cancer Treatments and Mutations
article

Real-World Performance of the EasyPGX® Ready Epidermal Growth Factor Receptor Assay for Genomic Testing of Non-Small Cell Lung Cancer Samples

Wolfram Jochum, Sandra Floriani, Izadora Demmer, Michael B. Schmid, Diana Born
article en

Abstract

<b>Background/Objectives</b>: Activating epidermal growth factor receptor (<i>EGFR</i>) variants is the most common targetable alteration in non-small cell lung cancer (NSCLC). Clinical decision-making requires fast and reliable detection of <i>EGFR</i> variants in early and advanced NSCLC, but limited available tissue necessitates tissue-sparing approaches and optimized sample management. The objective of this study was to assess the performance of the commercial EasyPGX<sup>®</sup> ready EGFR assay using real-world clinical NSCLC samples. <b>Methods</b>: A consecutive cohort of 804 non-squamous NSCLC samples was prospectively analyzed with the real-time quantitative polymerase chain reaction (RT-qPCR)-based EasyPGX<sup>®</sup> ready EGFR assay (Diatech Pharmacogenetics, Jesi, Ancona, Italy) and compared to next-generation sequencing (NGS) assays. <b>Results</b>: NGS revealed conclusive results in 99.7% samples, of which 11.1% had at least one <i>EGFR</i> variant. The most common variants were exon 19 deletions and p.L858R. The RT-qPCR-based assay identified <i>EGFR</i> variants with high accuracy (overall concordance rate 94.3%) over a broad range of clinical sample types, variant allele frequencies, tumor cell contents and deoxyribonucleic acid (DNA) input amounts. <b>Conclusions</b>: This study demonstrates that the EasyPGX<sup>®</sup> ready EGFR assay is a valid approach for the rapid detection of common <i>EGFR</i> variants in real-world clinical NSCLC samples with DNA inputs as low as 5 ng (less than the 15 ng recommended by the manufacturer), improving sample management in small specimens with limited quantity of nucleic acids.

BiomedicinesVol. 13(4)
University of Zurich (CH), Kantonsspital St. Gallen (CH)
Peace, Justice and strong institutions
Openalex Percentile: Top 91%
Lung Cancer Treatments and Mutations
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