The complete chloroplast genome of <i>Gerbera piloselloides</i> (L.) Cass., 1820 (Carduoideae, Asteraceae) and its phylogenetic analysis

<i>Gerbera piloselloides</i> (L.) Cass., 1820 of the genus <i>Gerbera</i> is of importance in Chinese ethnic medicine. In this research, the whole genome DNA of <i>G. piloselloides</i> was extracted and sequenced using the Illumina NovaSeq platform, its chloroplast genome was assembled and annotated, and its sequence characteristics were analyzed using bioinformatic methods. The results showed that its chloroplast genome has a length of 151,871 bp and contains 133 annotated genes, consisting of 88 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. In total, 202 simple sequence repeat sites and 43 long repeats were detected in <i>G. piloselloides</i>, mainly consisting of mono-nucleotide and tri-nucleotide repeats, with A/T as the major base composition. The chloroplast genome of <i>G. piloselloides</i> contains 22,772 codons, with leucine-coding codons being the most abundant. Comparative genomics showed that the genome structure, composition and variation were basically the same in the Asteraceae family. The phylogenetic tree analysis indicated a close relationship between the genus <i>Atractylodes</i> and <i>Gerbera,</i> consistent with the morphological classification. The research of the <i>G. piloselloides</i> chloroplast genome will lay a foundation for species discrimination, genetic evolution analysis, and DNA barcode construction in <i>Gerbera</i> plants.

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Publication Details

Journal
Open Life Sciences
Published
2025-01-01
DOI
https://doi.org/10.1515/biol-2025-1070
Citations
3
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
2.42

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article

The complete chloroplast genome of Gerbera piloselloides (L.) Cass., 1820 (Carduoideae, Asteraceae) and its phylogenetic analysis

Wentao Sheng
3 citations
Open Life Sciences
Genomics and Phylogenetic Studies
2.42
article

The complete chloroplast genome of Gerbera piloselloides (L.) Cass., 1820 (Carduoideae, Asteraceae) and its phylogenetic analysis

Wentao Sheng
article en
3 citations

Abstract

<i>Gerbera piloselloides</i> (L.) Cass., 1820 of the genus <i>Gerbera</i> is of importance in Chinese ethnic medicine. In this research, the whole genome DNA of <i>G. piloselloides</i> was extracted and sequenced using the Illumina NovaSeq platform, its chloroplast genome was assembled and annotated, and its sequence characteristics were analyzed using bioinformatic methods. The results showed that its chloroplast genome has a length of 151,871 bp and contains 133 annotated genes, consisting of 88 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. In total, 202 simple sequence repeat sites and 43 long repeats were detected in <i>G. piloselloides</i>, mainly consisting of mono-nucleotide and tri-nucleotide repeats, with A/T as the major base composition. The chloroplast genome of <i>G. piloselloides</i> contains 22,772 codons, with leucine-coding codons being the most abundant. Comparative genomics showed that the genome structure, composition and variation were basically the same in the Asteraceae family. The phylogenetic tree analysis indicated a close relationship between the genus <i>Atractylodes</i> and <i>Gerbera,</i> consistent with the morphological classification. The research of the <i>G. piloselloides</i> chloroplast genome will lay a foundation for species discrimination, genetic evolution analysis, and DNA barcode construction in <i>Gerbera</i> plants.

Open Life SciencesVol. 20(1)
Nanchang Normal University (CN)
Education Department of Jiangxi Province
Peace, Justice and strong institutions
Openalex Percentile: Top 12%
Genomics and Phylogenetic Studies
2.42
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The complete chloroplast genome of <i>Gerbera piloselloides</i> (L.) Cass., 1820 (Carduoideae, Asteraceae) and its phylogenetic analysis — Wentao Sheng · Open Life Sciences (2025) | TGRS Research Map | TGRS