Fluorine–hydrogen interactions observed in a helix structure having an orn-free gramicidin S sequence incorporating 4-<i>trans</i>-fluoroproline

The deca-peptide Boc-(d-Phe-tFPro-Val-Leu-Leu)<sub>2</sub>-OMe (<b>1</b>) (Boc is <i>tert</i>-but-oxy-carbonyl, tFPro is 4-<i>trans</i>-fluoro-l-proline d-Phe is d-phenyl-alanine, Val is valine and Leu is leucine) crystallized in a methanol-solvated form (C<sub>68</sub>H<sub>104</sub>F<sub>2</sub>N<sub>10</sub>O<sub>13</sub>·CH<sub>4</sub>O). Peptide <b>1</b> has a sequence similar to gramicidin S (GS) incorporating tFPro. GS is a cyclic peptide, with the d-Phe-Pro unit known as a strong β-turn inducer in previous studies. Thus, it was initially assumed that <b>1</b> would bend at the d-Phe6-tFPro7 position, potentially forming a sheet-like structure. However, the structure of <b>1</b> was a helix, a surprising finding in GS-related structural studies. A factor enabling this helical formation could be the fluorine-H inter-actions between tFPro and the aromatic rings of d-Phe residues.

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Journal
Acta Crystallographica Section E Crystallographic Communications
Published
2025-03-27
DOI
https://doi.org/10.1107/s2056989025002592
Primary Topic
Chemical Synthesis and Analysis
Type
article
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article

Fluorine–hydrogen interactions observed in a helix structure having an orn-free gramicidin S sequence incorporating 4-trans-fluoroproline

Takuma Kato, Mitsunobu Doi, Akiko Asano, Mizuki Sakata
Acta Crystallographica Section E Crystallographic Communications
Chemical Synthesis and Analysis
article

Fluorine–hydrogen interactions observed in a helix structure having an orn-free gramicidin S sequence incorporating 4-trans-fluoroproline

Takuma Kato, Mitsunobu Doi, Akiko Asano, Mizuki Sakata
article en

Abstract

The deca-peptide Boc-(d-Phe-tFPro-Val-Leu-Leu)<sub>2</sub>-OMe (<b>1</b>) (Boc is <i>tert</i>-but-oxy-carbonyl, tFPro is 4-<i>trans</i>-fluoro-l-proline d-Phe is d-phenyl-alanine, Val is valine and Leu is leucine) crystallized in a methanol-solvated form (C<sub>68</sub>H<sub>104</sub>F<sub>2</sub>N<sub>10</sub>O<sub>13</sub>·CH<sub>4</sub>O). Peptide <b>1</b> has a sequence similar to gramicidin S (GS) incorporating tFPro. GS is a cyclic peptide, with the d-Phe-Pro unit known as a strong β-turn inducer in previous studies. Thus, it was initially assumed that <b>1</b> would bend at the d-Phe6-tFPro7 position, potentially forming a sheet-like structure. However, the structure of <b>1</b> was a helix, a surprising finding in GS-related structural studies. A factor enabling this helical formation could be the fluorine-H inter-actions between tFPro and the aromatic rings of d-Phe residues.

Acta Crystallographica Section E Crystallographic CommunicationsVol. 81(4)
Osaka University of Pharmaceutical Sciences (JP)
Clean water and sanitation
Openalex Percentile: Top 95%
Chemical Synthesis and Analysis
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