Exploiting the 5‐Amino‐11H‐Indolo[3,2‐c]isoquinoline Core to Achieve Better G‐Quadruplex Ligands for Cancer Therapy
G-quadruplexes (G4) are secondary structures that can form within guanine-rich DNA sequences and have cell proliferation regulatory functions. Targeting DNA G4 structures has emerged as a promising anticancer therapy, highlighting the need for new G4 ligands with reduced number of cationic groups to ensure lower toxicity. Herein, the synthesis of mono- and di-substituted 5-amino-11H-indolo[3,2-c]isoquinolines is reported. Fluorescence spectroscopy studies indicate that substitution in position 11 dictates the preference of binding to different G4. Compound 10, which features an ethylpyrrolidine side chain, demonstrates a binding preference by one order of magnitude for parallel c-MYCG4 (K<sub>b</sub> = 10<sup>7</sup> m<sup>-1</sup>), over parallel k-RASG4 (K<sub>b</sub> = 10<sup>6</sup> m<sup>-1</sup>), and hybrid TeloG4 and dsDNA (K<sub>b</sub> = 10<sup>5</sup> m<sup>-1</sup>). Molecular docking studies reveal that 10 can bind not only to the flat G-quartets but also to bridge between two loops of c-MYCG4 through hydrogen bonds, which may explain its capacity to discriminate between G4. Moreover, 10 drastically reduces the cell viability of breast cancer cells at a concentration of 10 μm. Overall, herein, the discovery of a new potent and selective G4 ligand, with reduced number of side chains and with antiproliferative activity in cancer cells, is reported, which deserves to be further investigated.
Authors
- Noélia Duarte (ORCID: https://orcid.org/0000-0003-3119-8745)
- Bárbara Bahls
- Joana P. Miranda (ORCID: https://orcid.org/0000-0002-7804-4068)
- Bruno L. Victor (ORCID: https://orcid.org/0000-0002-6472-5700)
- Ermelinda Maçôas (ORCID: https://orcid.org/0000-0001-8506-7025)
- S.P. Camões (ORCID: https://orcid.org/0000-0003-0355-5338)
- Alexandra Paulo (ORCID: https://orcid.org/0000-0003-1433-5402)
- Israa M. Aljnadi (ORCID: https://orcid.org/0000-0003-1721-0373)
- Eduarda Mendes (ORCID: https://orcid.org/0000-0002-7926-8821)
Institutions
- University of Lisbon (PT)
- Universidade Politécnica de Lisboa (PT)
- Drug Discovery Laboratory (Norway) (NO)
Publication Details
- Journal
- ChemMedChem
- Published
- 2025-03-26
- DOI
- https://doi.org/10.1002/cmdc.202401019
- Citations
- 1
- Primary Topic
- DNA and Nucleic Acid Chemistry
- Type
- article
- Field-Weighted Citation Impact
- 0.81