Exploiting the 5‐Amino‐11H‐Indolo[3,2‐c]isoquinoline Core to Achieve Better G‐Quadruplex Ligands for Cancer Therapy

G-quadruplexes (G4) are secondary structures that can form within guanine-rich DNA sequences and have cell proliferation regulatory functions. Targeting DNA G4 structures has emerged as a promising anticancer therapy, highlighting the need for new G4 ligands with reduced number of cationic groups to ensure lower toxicity. Herein, the synthesis of mono- and di-substituted 5-amino-11H-indolo[3,2-c]isoquinolines is reported. Fluorescence spectroscopy studies indicate that substitution in position 11 dictates the preference of binding to different G4. Compound 10, which features an ethylpyrrolidine side chain, demonstrates a binding preference by one order of magnitude for parallel c-MYCG4 (K<sub>b</sub> = 10<sup>7</sup> m<sup>-1</sup>), over parallel k-RASG4 (K<sub>b</sub> = 10<sup>6</sup> m<sup>-1</sup>), and hybrid TeloG4 and dsDNA (K<sub>b</sub> = 10<sup>5</sup> m<sup>-1</sup>). Molecular docking studies reveal that 10 can bind not only to the flat G-quartets but also to bridge between two loops of c-MYCG4 through hydrogen bonds, which may explain its capacity to discriminate between G4. Moreover, 10 drastically reduces the cell viability of breast cancer cells at a concentration of 10 μm. Overall, herein, the discovery of a new potent and selective G4 ligand, with reduced number of side chains and with antiproliferative activity in cancer cells, is reported, which deserves to be further investigated.

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Journal
ChemMedChem
Published
2025-03-26
DOI
https://doi.org/10.1002/cmdc.202401019
Citations
1
Primary Topic
DNA and Nucleic Acid Chemistry
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article
Field-Weighted Citation Impact
0.81
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article

Exploiting the 5‐Amino‐11H‐Indolo[3,2‐c]isoquinoline Core to Achieve Better G‐Quadruplex Ligands for Cancer Therapy

Noélia Duarte, Bárbara Bahls, Joana P. Miranda, Bruno L. Victor et al.
1 citations
ChemMedChem
DNA and Nucleic Acid Chemistry
0.81
article

Exploiting the 5‐Amino‐11H‐Indolo[3,2‐c]isoquinoline Core to Achieve Better G‐Quadruplex Ligands for Cancer Therapy

Noélia Duarte, Bárbara Bahls, Joana P. Miranda, Bruno L. Victor, Ermelinda Maçôas, S.P. Camões, Alexandra Paulo, Israa M. Aljnadi, Eduarda Mendes
article en
1 citations

Abstract

G-quadruplexes (G4) are secondary structures that can form within guanine-rich DNA sequences and have cell proliferation regulatory functions. Targeting DNA G4 structures has emerged as a promising anticancer therapy, highlighting the need for new G4 ligands with reduced number of cationic groups to ensure lower toxicity. Herein, the synthesis of mono- and di-substituted 5-amino-11H-indolo[3,2-c]isoquinolines is reported. Fluorescence spectroscopy studies indicate that substitution in position 11 dictates the preference of binding to different G4. Compound 10, which features an ethylpyrrolidine side chain, demonstrates a binding preference by one order of magnitude for parallel c-MYCG4 (K<sub>b</sub> = 10<sup>7</sup> m<sup>-1</sup>), over parallel k-RASG4 (K<sub>b</sub> = 10<sup>6</sup> m<sup>-1</sup>), and hybrid TeloG4 and dsDNA (K<sub>b</sub> = 10<sup>5</sup> m<sup>-1</sup>). Molecular docking studies reveal that 10 can bind not only to the flat G-quartets but also to bridge between two loops of c-MYCG4 through hydrogen bonds, which may explain its capacity to discriminate between G4. Moreover, 10 drastically reduces the cell viability of breast cancer cells at a concentration of 10 μm. Overall, herein, the discovery of a new potent and selective G4 ligand, with reduced number of side chains and with antiproliferative activity in cancer cells, is reported, which deserves to be further investigated.

ChemMedChemVol. 20(11)
University of Lisbon (PT), Universidade Politécnica de Lisboa (PT), Drug Discovery Laboratory (Norway) (NO)
Reduced inequalities
Openalex Percentile: Top 30%
DNA and Nucleic Acid Chemistry
0.81
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