High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829)

Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obligate heterotroph lacking symbiotic zooxanthellae, exhibits remarkable tolerance to conditions that cause bleaching and mortality in zooxanthellate species. With its extensive low-latitude distribution across multiple oceans, T. coccinea has become a highly invasive species, adversely impacting native species, degrading local ecosystems, and causing significant socio-economic challenges that demand effective management. Despite substantial research efforts, the molecular biology of T. coccinea remains insufficiently characterized. To address this gap, we generated a draft genome assembly for T. coccinea using PacBio Hi-Fi long-read sequencing. The assembly spans 875.9 Mb with a scaffold N50 of 694.3 kb and demonstrates high completeness, with a BUSCO score of 97.4%. A total of 37,307 protein-coding sequences were identified, 95.2% of which were functionally annotated through comparisons with established protein databases. This reference genome provides a valuable resource for understanding the genetic structure of T. coccinea, advancing research into its adaptive mechanism to environmental changes, and informing conservation and management strategies to mitigate its invasive impact.

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Publication Details

Journal
Scientific Data
Published
2025-03-26
DOI
https://doi.org/10.1038/s41597-025-04839-7
Citations
1
Primary Topic
Coral and Marine Ecosystems Studies
Type
article
Field-Weighted Citation Impact
1.72
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article

High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829)

Lisui Bao, Wentao Han, Lingling Zhang, Shi Wang et al.
1 citations
Scientific Data
Coral and Marine Ecosystems Studies
1.72
article

High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829)

Lisui Bao, Wentao Han, Lingling Zhang, Shi Wang, Kai Chen, Jingjie Hu, Zhenmin Bao, Xiaomei Chen, C. J. Tang, Xinyao Chang
article en
1 citations

Abstract

Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obligate heterotroph lacking symbiotic zooxanthellae, exhibits remarkable tolerance to conditions that cause bleaching and mortality in zooxanthellate species. With its extensive low-latitude distribution across multiple oceans, T. coccinea has become a highly invasive species, adversely impacting native species, degrading local ecosystems, and causing significant socio-economic challenges that demand effective management. Despite substantial research efforts, the molecular biology of T. coccinea remains insufficiently characterized. To address this gap, we generated a draft genome assembly for T. coccinea using PacBio Hi-Fi long-read sequencing. The assembly spans 875.9 Mb with a scaffold N50 of 694.3 kb and demonstrates high completeness, with a BUSCO score of 97.4%. A total of 37,307 protein-coding sequences were identified, 95.2% of which were functionally annotated through comparisons with established protein databases. This reference genome provides a valuable resource for understanding the genetic structure of T. coccinea, advancing research into its adaptive mechanism to environmental changes, and informing conservation and management strategies to mitigate its invasive impact.

Scientific DataVol. 12(1)
Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (CN), Qingdao National Laboratory for Marine Science and Technology (CN), Ocean University of China (CN), Hainan Tropical Ocean University (CN)
Life below water
Openalex Percentile: Top 19%
Coral and Marine Ecosystems Studies
1.72
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