Synthesis, crystal structure and Hirshfeld surface analysis of 2-[(2,4-dimethylbenzyl)sulfanyl]pyrimidine-4,6-diamine

The title compound, C<sub>13</sub>H<sub>16</sub>N<sub>4</sub>S (DAMP-DMB), was synthesized through the reaction of 2,4-di-methyl-benzyl chloride with di-amino-pyrimidine-thiol. Single-crystal X-ray diffraction analysis confirmed that the compound crystallizes in the monoclinic crystal system, space group <i>P</i>2<sub>1</sub>/<i>c</i>. The asymmetric unit contains a single mol-ecular entity. Structural examination revealed the presence of a dimeric arrangement consolidated by N-H⋯N hydrogen-bonding inter-actions. Additionally, Hirshfeld surface analysis indicated that H⋯H, N⋯H, C⋯H, and S⋯H contacts account for 98.9% of the total inter-molecular inter-actions to the Hirshfeld surface.

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Journal
Acta Crystallographica Section E Crystallographic Communications
Published
2025-03-25
DOI
https://doi.org/10.1107/s2056989025002440
Primary Topic
Phenothiazines and Benzothiazines Synthesis and Activities
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article
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article

Synthesis, crystal structure and Hirshfeld surface analysis of 2-[(2,4-dimethylbenzyl)sulfanyl]pyrimidine-4,6-diamine

R. Ya. Okmanov, Bаtirbаy Tоrаmbеtоv, A. D. Matchanov, Khamid U. Khodjaniyazov et al.
Acta Crystallographica Section E Crystallographic Communications
Phenothiazines and Benzothiazines Synthesis and Activities
article

Synthesis, crystal structure and Hirshfeld surface analysis of 2-[(2,4-dimethylbenzyl)sulfanyl]pyrimidine-4,6-diamine

R. Ya. Okmanov, Bаtirbаy Tоrаmbеtоv, A. D. Matchanov, Khamid U. Khodjaniyazov, T.S. Kholikov, Gulrukh Salieva, Shakhnoza Kadirova
article en

Abstract

The title compound, C<sub>13</sub>H<sub>16</sub>N<sub>4</sub>S (DAMP-DMB), was synthesized through the reaction of 2,4-di-methyl-benzyl chloride with di-amino-pyrimidine-thiol. Single-crystal X-ray diffraction analysis confirmed that the compound crystallizes in the monoclinic crystal system, space group <i>P</i>2<sub>1</sub>/<i>c</i>. The asymmetric unit contains a single mol-ecular entity. Structural examination revealed the presence of a dimeric arrangement consolidated by N-H⋯N hydrogen-bonding inter-actions. Additionally, Hirshfeld surface analysis indicated that H⋯H, N⋯H, C⋯H, and S⋯H contacts account for 98.9% of the total inter-molecular inter-actions to the Hirshfeld surface.

Acta Crystallographica Section E Crystallographic CommunicationsVol. 81(4)
Academy of Sciences Republic of Uzbekistan (UZ), Yunusov Institute of the Chemistry of Plant Substances (UZ), Tashkent Medical Academy (UZ), National University of Uzbekistan (UZ)
Clean water and sanitation
Openalex Percentile: Top 95%
Phenothiazines and Benzothiazines Synthesis and Activities
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Synthesis, crystal structure and Hirshfeld surface analysis of 2-[(2,4-dimethylbenzyl)sulfanyl]pyrimidine-4,6-diamine — R. Ya. Okmanov, Bаtirbаy Tоrаmbеtоv, et al. · Acta Crystallographica Section E Crystallographic Communications (2025) | TGRS Research Map | TGRS