FOXM1 expression reverts aging chromatin profiles through repression of the senescence-associated pioneer factor AP-1

Aging is characterized by changes in gene expression, some of which can drive deleterious cellular phenotypes and senescence. The transcriptional activation of senescence genes has been mainly attributed to epigenetic shifts, but the changes in chromatin accessibility and its underlying mechanisms remain largely elusive in natural aging. Here, we profiled chromatin accessibility in human dermal fibroblasts (HDFs) from individuals with ages ranging from neonatal to octogenarian. We found that AP-1 binding motifs are prevalent in elderly-specific accessible chromatin regions while neonatal-specific regions are highly enriched for TEAD binding motifs. We further show that TEAD4 and FOXM1 share a conserved transcriptional regulatory landscape controlled by a not previously described and age-dependent enhancer that loses accessibility with aging and whose deletion drives senescence. Finally, we demonstrate that FOXM1 ectopic expression in elderly cells partially resets chromatin accessibility to a youthful state due to FOXM1's repressive function on several members of the AP-1 complex, which is known to trigger the senescence transcriptional program. These results place FOXM1 at a top hierarchical level in chromatin remodeling required to prevent senescence.

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Journal
Nature Communications
Published
2025-03-25
DOI
https://doi.org/10.1038/s41467-025-57503-4
Citations
10
Primary Topic
FOXO transcription factor regulation
Type
article
Field-Weighted Citation Impact
8.06
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article

FOXM1 expression reverts aging chromatin profiles through repression of the senescence-associated pioneer factor AP-1

José Bessa, Elsa Logarinho, Joana Teixeira, Mafalda Galhardo et al.
10 citations
Nature Communications
FOXO transcription factor regulation
8.06
article

FOXM1 expression reverts aging chromatin profiles through repression of the senescence-associated pioneer factor AP-1

José Bessa, Elsa Logarinho, Joana Teixeira, Mafalda Galhardo, João M. Nogueira, Fábio J. Ferreira
article en
10 citations

Abstract

Aging is characterized by changes in gene expression, some of which can drive deleterious cellular phenotypes and senescence. The transcriptional activation of senescence genes has been mainly attributed to epigenetic shifts, but the changes in chromatin accessibility and its underlying mechanisms remain largely elusive in natural aging. Here, we profiled chromatin accessibility in human dermal fibroblasts (HDFs) from individuals with ages ranging from neonatal to octogenarian. We found that AP-1 binding motifs are prevalent in elderly-specific accessible chromatin regions while neonatal-specific regions are highly enriched for TEAD binding motifs. We further show that TEAD4 and FOXM1 share a conserved transcriptional regulatory landscape controlled by a not previously described and age-dependent enhancer that loses accessibility with aging and whose deletion drives senescence. Finally, we demonstrate that FOXM1 ectopic expression in elderly cells partially resets chromatin accessibility to a youthful state due to FOXM1's repressive function on several members of the AP-1 complex, which is known to trigger the senescence transcriptional program. These results place FOXM1 at a top hierarchical level in chromatin remodeling required to prevent senescence.

Nature CommunicationsVol. 16(1)
Universidade do Porto (PT), Institut de Biologie Moléculaire et Cellulaire (FR), i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto (PT)
Openalex Percentile: Top 2%
FOXO transcription factor regulation
8.06
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FOXM1 expression reverts aging chromatin profiles through repression of the senescence-associated pioneer factor AP-1 — José Bessa, Elsa Logarinho, et al. · Nature Communications (2025) | TGRS Research Map | TGRS